Basic Information
Locus ID:
nbisL1-mrna-21543
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
PWWP domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 8688872 | 8692012 | - | nbisL1-mrna-21543 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.39 | 113,712.88 Da | 52.01 | 67.11 | -0.74 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05162 | PWWP | 184 | 267 | 4.57255E-26 | - |
| Pfam | PF00855 | PWWP domain | 183 | 268 | 1.9E-19 | IPR000313 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 180 | 281 | 8.42E-27 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 174 | 277 | 1.7E-26 | - |
| SMART | SM00293 | PWWP_4 | 181 | 242 | 7.0E-10 | IPR000313 |
| ProSiteProfiles | PS50812 | PWWP domain profile. | 183 | 244 | 14.97416 | IPR000313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 802 | 829 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 414 | 430 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 559 | 574 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 50 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 414 | 433 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 9 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 602 | 627 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 445 | 476 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 500 | 748 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 802 | 855 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 440 | 476 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 733 | 748 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 650 | 682 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 507 | 531 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 967 | 990 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40340.2 | - | 0 |
| RefSeq | XP_015578174.2 | PWWP domain-containing protein 3 isoform X2 [Ricinus communis] | 0 |
| Q9FNE4 | PWWP domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=PDP3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JFT2 | Uncharacterized protein LOC8289805 isoform X1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology