Basic Information
Locus ID:
nbisL1-mrna-21524
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Protein of unknown function (DUF295)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 9186886 | 9188517 | + | nbisL1-mrna-21524 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.31 | 61,232.32 Da | 41.30 | 74.99 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03478 | Protein of unknown function (DUF295) | 452 | 514 | 2.9E-7 | IPR005174 |
| Pfam | PF00646 | F-box domain | 71 | 103 | 7.2E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 71 | 107 | 1.44E-8 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 72 | 112 | 4.1E-9 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 372 | 412 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 372 | 410 | - | - |
| Coils | Coil | Coil | 371 | 391 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_022725093.1 | uncharacterized protein LOC111281707 [Durio zibethinus] | 0 |
| TrEMBL | A0A6P5XA13 | uncharacterized protein LOC111281707 OS=Durio zibethinus OX=66656 GN=LOC111281707 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.2018 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-2474, nbisL1-mrna-2502 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-21524 |