Basic Information
Locus ID:
nbisL1-mrna-21424
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002191F_pilon | 638799 | 644907 | - | nbisL1-mrna-21424 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.43 | 89,981.77 Da | 61.45 | 65.86 | -0.94 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 713 | 753 | 7.21315E-21 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 711 | 758 | 7.1E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 713 | 760 | 7.85E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 698 | 764 | 1.3E-13 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 714 | 753 | 10.748424 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 372 | 386 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 368 | 393 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 110 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 339 | 358 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 577 | 596 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 466 | 503 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 413 | 432 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 79 | 115 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 129 | 148 | - | - |
| Coils | Coil | Coil | 643 | 670 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021659180.1 | uncharacterized protein LOC110649078 isoform X1 [Hevea brasiliensis] | 0 |
| TrEMBL | A0A8T2XX18 | RING-type domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_019890 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology