Basic Information
Locus ID:
nbisL1-mrna-21417
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Carbohydrate-binding protein of the ER
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 13913664 | 13914632 | - | nbisL1-mrna-21417 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.23 | 36,081.12 Da | 38.49 | 94.44 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 27 | 289 | 9.56279E-103 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 26 | 293 | 4.0E-48 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 5 | 293 | 2.43E-76 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1 | 97 | 4.5E-30 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 98 | 313 | 1.7E-61 | - |
| SMART | SM00220 | serkin_6 | 21 | 295 | 1.8E-30 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 21 | 295 | 34.718063 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 27 | 50 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 142 | 154 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G51550.1 | Malectin/receptor-like protein kinase family protein. Encodes a synergid-expressed, plasma-membrane localized receptor-like kinase that accumulates asymetrically in the synergid membrnane at the filiform apparatus and mediates male-female gametophyte interactions during pollen tube reception. | 0 |
| RefSeq | XP_021633095.1 | receptor-like protein kinase FERONIA [Manihot esculenta] | 0 |
| Q9SCZ4 | Receptor-like protein kinase FERONIA OS=Arabidopsis thaliana OX=3702 GN=FER PE=1 SV=1 | 0 | |
| TrEMBL | A0A067JTJ6 | Protein kinase domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_19970 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0463 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0413 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00023687 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_6_RagTag.373, evm.TU.Scaffold_6_RagTag.389 ... |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-15255 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-317 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000011l.100 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006847 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-18378, nbisL1-mrna-21417, nbisL1-mrna-21418 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-17235, nbisL1-mrna-22174 |