Basic Information
Locus ID:
nbisL1-mrna-2139
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Leucine-rich repeat receptor protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000017F_pilon | 7450526 | 7454352 | + | nbisL1-mrna-2139 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.18 | 134,797.59 Da | 33.85 | 106.91 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 7 | 43 | 8.3E-10 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 625 | 685 | 1.1E-9 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 699 | 720 | 0.3 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 968 | 1236 | 6.9E-47 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 945 | 1236 | 5.13E-78 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 337 | 559 | 7.57E-50 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 28 | 305 | 1.09E-50 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 571 | 859 | 2.49E-62 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 927 | 1039 | 6.1E-38 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 188 | 319 | 7.6E-36 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 566 | 867 | 1.1E-85 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1040 | 1243 | 3.1E-61 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 321 | 443 | 7.0E-27 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 6 | 187 | 5.0E-47 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 444 | 565 | 9.1E-31 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 165 | 189 | 52.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 69 | 92 | 190.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 492 | 516 | 150.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 672 | 695 | 110.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 516 | 542 | 57.0 | - |
| SMART | SM00220 | serkin_6 | 964 | 1237 | 2.8E-32 | IPR000719 |
| SMART | SM00365 | LRR_sd22_2 | 165 | 186 | 420.0 | - |
| SMART | SM00369 | LRR_typ_2 | 93 | 117 | 54.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 770 | 794 | 77.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 190 | 214 | 68.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 696 | 719 | 68.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 262 | 291 | 200.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 397 | 420 | 230.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 492 | 513 | 460.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 624 | 656 | 48.0 | - |
| SMART | SM00369 | LRR_typ_2 | 696 | 720 | 13.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 69 | 95 | 72.0 | - |
| SMART | SM00369 | LRR_typ_2 | 624 | 648 | 12.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 540 | 577 | 240.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 818 | 841 | 190.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 262 | 286 | 42.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 964 | 1243 | 38.774521 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1086 | 1098 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 970 | 993 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07280.1 | Leucine-rich repeat transmembrane protein kinase. Encodes EMS1 (EXCESS MICROSPOROCYTES1), a putative leucine-rich repeat receptor protein kinase that controls somatic and reproductive cell fates in Arabidopsis anther. | 0 |
| RefSeq | XP_012090287.1 | leucine-rich repeat receptor protein kinase EMS1 [Jatropha curcas] | 0 |
| Q9LYN8 | Leucine-rich repeat receptor protein kinase EMS1 OS=Arabidopsis thaliana OX=3702 GN=EMS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067JEQ6 | Protein kinase domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_26138 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg12909, jg14016, jg2319, jg889 |
| Anacardiaceae | Pistacia vera | 8 | pistato.v30034580, pistato.v30167950, pistato.v30168050 ... |
| Apiaceae | Apium graveolens | 1 | Ag2G01986 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G03190 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G07280.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012465m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g35610.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g053610.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2102 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2175 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2700 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00010232 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC1BG058770 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12656, nbisL1-mrna-29200 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10442, nbisL1-mrna-7229 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-12927, nbisL1-mrna-12928, nbisL1-mrna-2139 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000008l.31, add.evm.TU.utg000010l.151 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17149, nbisL1-mrna-17646 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20612, nbisL1-mrna-6260 |
| Salicaceae | Populus euphratica | 2 | populus_peu29255, populus_peu30617 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132631870 |
| Solanaceae | Solanum chilense | 1 | SOLCI001805500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014643 |