Basic Information
Locus ID:
nbisL1-mrna-21385
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 2917917 | 2918399 | - | nbisL1-mrna-21385 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.26 | 17,685.88 Da | 28.28 | 92.19 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 86 | 148 | 8.35835E-19 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 85 | 147 | 2.2E-15 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 10 | 71 | 2.4E-10 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 4 | 148 | 3.02E-41 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 104 | 155 | 1.5E-15 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 1 | 103 | 2.1E-28 | - |
| SMART | SM00054 | efh_1 | 122 | 150 | 2.0E-8 | IPR002048 |
| SMART | SM00054 | efh_1 | 86 | 114 | 5.7E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 47 | 75 | 0.12 | IPR002048 |
| SMART | SM00054 | efh_1 | 11 | 39 | 0.071 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 82 | 117 | 14.569197 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 7 | 42 | 12.923368 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 43 | 78 | 10.859108 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 118 | 153 | 14.122869 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 131 | 143 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 95 | 107 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 56 | 68 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 20 | 32 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25600.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_034912524.1 | probable calcium-binding protein CML16 [Populus alba] | 0 |
| Q9LI84 | Probable calcium-binding protein CML16 OS=Arabidopsis thaliana OX=3702 GN=CML16 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5N5L6F8 | Calcium-binding protein CML16 OS=Salix brachista OX=2182728 GN=DKX38_015805 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology