Basic Information
Locus ID:
nbisL1-mrna-21376
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr09 | 7985064 | 7989335 | - | nbisL1-mrna-21376 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.42 | 31,525.67 Da | 45.63 | 52.78 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05495 | CHY zinc finger | 26 | 106 | 4.6E-20 | IPR008913 |
| Pfam | PF13639 | Ring finger domain | 160 | 203 | 1.3E-7 | IPR001841 |
| Pfam | PF14599 | Zinc-ribbon | 208 | 265 | 7.8E-25 | IPR039512 |
| SUPERFAMILY | SSF57850 | RING/U-box | 160 | 214 | 1.97E-11 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 23 | 95 | 6.67E-19 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 97 | 153 | 1.57E-19 | IPR037275 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 153 | 227 | 1.2E-10 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 232 | 270 | 6.6E-18 | - |
| SMART | SM00184 | ring_2 | 161 | 203 | 9.0E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 161 | 204 | 11.692616 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 19 | 94 | 25.510483 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 96 | 160 | 31.995352 | IPR017921 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62970.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_012082671.1 | E3 ubiquitin-protein ligase MIEL1 [Jatropha curcas] | 0 |
| Q8VZK0 | E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067JVU6 | RING finger and CHY zinc finger domain-containing protein 1 OS=Jatropha curcas OX=180498 GN=JCGZ_13862 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology