Basic Information
Locus ID:
nbisL1-mrna-2137
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000017F_pilon | 7437357 | 7441647 | + | nbisL1-mrna-2137 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 55,376.93 Da | 43.21 | 85.73 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00023 | Ankyrin repeat | 221 | 251 | 7.3E-6 | IPR002110 |
| Pfam | PF00023 | Ankyrin repeat | 178 | 207 | 4.4E-4 | IPR002110 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 49 | 132 | 1.4E-15 | IPR020683 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 14 | 274 | 2.29E-45 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 314 | 375 | 2.93E-8 | - |
| Gene3D | G3DSA:1.25.40.20 | - | 149 | 270 | 1.1E-21 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 4 | 148 | 7.9E-30 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 297 | 377 | 2.3E-6 | IPR013083 |
| SMART | SM00248 | ANK_2a | 220 | 252 | 2.1E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 77 | 106 | 0.47 | IPR002110 |
| SMART | SM00248 | ANK_2a | 111 | 141 | 1.3 | IPR002110 |
| SMART | SM00248 | ANK_2a | 44 | 73 | 1.2E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 177 | 206 | 1.7E-4 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 177 | 206 | 10.179323 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 220 | 252 | 11.38063 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 220 | 247 | 10.895672 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 44 | 76 | 13.83795 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 44 | 75 | 12.726336 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 177 | 209 | 11.00669 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 319 | 369 | 9.184606 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 334 | 343 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 462 | 481 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_021648639.1 | E3 ubiquitin-protein ligase XBAT33-like [Hevea brasiliensis] | 0 |
| Q4FE45 | E3 ubiquitin-protein ligase XBAT33 OS=Arabidopsis thaliana OX=3702 GN=XBAT33 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2LD08 | Uncharacterized protein MANES_14G027900 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology