Basic Information
Locus ID:
nbisL1-mrna-21364
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
F-box FBD LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002088F_pilon | 1261771 | 1264585 | + | nbisL1-mrna-21364 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.63 | 64,721.38 Da | 46.20 | 102.68 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 3 | 40 | 3.5E-9 | IPR001810 |
| SUPERFAMILY | SSF52058 | L domain-like | 118 | 342 | 4.76E-13 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 1 | 46 | 2.88E-11 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 83 | 409 | 5.1E-14 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 39 | 2.4E-8 | - |
| SMART | SM00256 | fbox_2 | 7 | 47 | 3.7E-4 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 34 | 10.371784 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58930.1 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_021651842.1 | putative FBD-associated F-box protein At5g56410 [Hevea brasiliensis] | 0 |
| Q8GXW6 | F-box/LRR-repeat protein At3g58930 OS=Arabidopsis thaliana OX=3702 GN=At3g58930 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6P9EYU6 | F-box/LRR-repeat protein At3g03360-like OS=Juglans regia OX=51240 GN=LOC109018596 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology