Basic Information
Locus ID:
nbisL1-mrna-2132
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Haloacid dehalogenase-like hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 2856622 | 2861805 | + | nbisL1-mrna-2132 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.67 | 43,802.33 Da | 46.38 | 78.72 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13344 | Haloacid dehalogenase-like hydrolase | 50 | 153 | 2.3E-17 | IPR006357 |
| Pfam | PF13242 | HAD-hyrolase-like | 288 | 379 | 3.5E-14 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 50 | 380 | 1.27E-27 | IPR036412 |
| Gene3D | G3DSA:3.40.50.1000 | - | 50 | 380 | 4.2E-93 | IPR023214 |
| Gene3D | G3DSA:3.40.50.1000 | - | 120 | 288 | 4.2E-93 | IPR023214 |
| TIGRFAM | TIGR01456 | CECR5: HAD hydrolase, TIGR01456 family | 48 | 384 | 3.8E-119 | IPR006353 |
| TIGRFAM | TIGR01460 | HAD-SF-IIA: HAD hydrolase, family IIA | 50 | 356 | 1.1E-60 | IPR006357 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G45740.1 | hydrolase family protein / HAD-superfamily protein. | 0 |
| RefSeq | XP_021654307.1 | uncharacterized protein YKR070W-like isoform X2 [Hevea brasiliensis] | 0 |
| Q91WM2 | Haloacid dehalogenase-like hydrolase domain-containing 5 OS=Mus musculus OX=10090 GN=Hdhd5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251JXG7 | Haloacid dehalogenase-like hydrolase domain-containing 5 OS=Manihot esculenta OX=3983 GN=MANES_10G040600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg14600, jg35827 |
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_12974, gene_12976, gene_7074 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah033518 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g175390 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg20770, Sbi_jg22986, Sbi_jg26859, Sbi_jg33714 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg16861, Seu_jg8402 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00003056, GOSA_00009298, GOSA_00009299 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl62030, Sgl66590, Sgl73116, Sgl76664 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000006836, gene:ENSEOMG00000021924 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0011550, CQ.Regalona.r1.9BG0004180 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30059410, pistato.v30171730 |
| Apiaceae | Apium graveolens | 1 | Ag2G00917 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G014620 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103711068 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_07.345.V1.1, AsparagusV1_08.1155.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G22712 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G45740.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10002577m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g15770.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g058570.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G0673, Ceq08G2383 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G0681, Cgl08G2577 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g00150 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0328s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g01720 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-2322, nbisL1-mrna-2323 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.1490, evm.TU.LG09.987 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00016054 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb0G36867 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.4028, BH01.4431, CH01.4661 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0243860, gene-QOZ80_3BG0284380 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0385920.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_068832 |
| Poaceae | Oryza coarctata | 1 | Oco05G010240 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g17590.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G393600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0405526, Pt_Chr0502312 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr04G008330, Chr07G003280 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G352300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG014330, gene_TRIDC4BG035750 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G105400.1, TraesCS4B02G198500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb397220_P001 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g3872 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG04.891, evm.TU.LG05.2046, evm.TU.LG19.1486 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g02800 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_12_RagTag.315, evm.TU.Scaffold_4_RagTag.1662 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-24482, nbisL1-mrna-26077 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10744, nbisL1-mrna-12658 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-19592, nbisL1-mrna-4474 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.920, evm.TU.utg000027l.383 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000219, Maker00018173 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2132, nbisL1-mrna-5601 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11817, nbisL1-mrna-9512 |
| Salicaceae | Populus euphratica | 2 | populus_peu06336, populus_peu20168 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132605289 |
| Solanaceae | Solanum chilense | 1 | SOLCI003047100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107023741 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3271 |
| Tamaricaceae | Tamarix chinensis | 2 | TC02G2242, TC11G0015 |
| Zosteraceae | Zostera marina | 1 | Zosma06g22720.v3.1 |