Basic Information
Locus ID:
nbisL1-mrna-21274
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Protein TIC 20-IV, chloroplastic-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000108F_pilon | 331031 | 333135 | - | nbisL1-mrna-21274 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.32 | 33,602.93 Da | 49.67 | 91.58 | 0.35 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03320.1 | translocon at the inner envelope membrane of chloroplasts 20-IV. | 0 |
| RefSeq | XP_024446884.1 | protein TIC 20-IV, chloroplastic [Populus trichocarpa] | 0 |
| Q9ZQZ9 | Protein TIC 20-IV, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-IV PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2J3X2 | Protein TIC 20 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg19703 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_23093, gene_3558 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023453 |
| Amaranthaceae | Beta vulgaris | 4 | BVRB_1g006900, BVRB_1g009210, BVRB_6g143840, BVRB_6g147420 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg28779, Sbi_jg3173, Sbi_jg42240, Sbi_jg44816 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg27292, Seu_jg6737 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00000037, GOSA_00002538 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl11579, Sgl16949, Sgl17076, Sgl35148, Sgl40527 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000001196, gene:ENSEOMG00000014098 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1AG0008740, CQ.Regalona.r1.1BG0017130 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30019340, pistato.v30046900 |
| Apiaceae | Apium graveolens | 1 | Ag5G01126 |
| Arecaceae | Cocos nucifera | 3 | COCNU_06G009900, COCNU_12G004160, scaffold011195G000040 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103708044, gene-LOC103709930, gene-LOC103718687 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_08.2768.V1.1, AsparagusV1_08.2769.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G33853 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G04940.1, AT4G03320.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10026827m.g.v1.0, Thhalv10028869m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g03780.v2.2, Sp6g03350.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB06g045810.2N, BniB08g046130.2N, BniB08g046140.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G2546, Ceq03G0991 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G2632, Cgl03G1075 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno17g02590 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0117s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g16990 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-5733, nbisL1-mrna-5749 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1934 |
| Poaceae | Echinochloa crus-galli | 5 | AH07.2596, BH03.3600, BH07.2413, CH03.3804, CH07.2484 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2BG0192990, gene-QOZ80_7AG0573210 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_023597, gene-QYE76_040447, gene-QYE76_040487 |
| Poaceae | Oryza coarctata | 4 | Oco03G015280, Oco04G015840, Oco13G010390 ... |
| Poaceae | Oryza sativa | 2 | LOC_Os02g40080.1, LOC_Os07g38110.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G319800, gene-BS78_04G195500 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0204647, Pt_Chr0204660, Pt_Chr0304470 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr06G007590, Chr09G025920, Chr13G007580, Chr19G004070 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G380900, Tel6E01G429200 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG025700, gene_TRIDC2BG030110 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G199800.1, TraesCS2B02G227100.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb107180_P001, Zm00001eb247090_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-10574 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g16666, Zma_g5380 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1389, evm.TU.LG12.31 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc10g07920, gene.Posoc10g07930 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_8_RagTag.1296, evm.TU.Scaffold_9_RagTag.1288 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-19030, nbisL1-mrna-20879 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-12230, nbisL1-mrna-18106, nbisL1-mrna-8727 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21274 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.796, evm.TU.utg000018l.429 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00002967, Maker00009928 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1257, nbisL1-mrna-13334 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11145, nbisL1-mrna-4786 |
| Salicaceae | Populus euphratica | 4 | populus_peu15263, populus_peu18680, populus_peu18693 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132603139, gene-LOC132627667 |
| Solanaceae | Solanum chilense | 2 | SOLCI000211200, SOLCI003892500 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107015647, gene-LOC107017029, gene-LOC107020600 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.23487_chr05_-, STRG.5758_chr02_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G2287 |