Basic Information
Locus ID:
nbisL1-mrna-21272
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Homocysteine s-methyltransferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr09 | 7154826 | 7158755 | + | nbisL1-mrna-21272 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.75 | 37,245.25 Da | 33.66 | 85.86 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02574 | Homocysteine S-methyltransferase | 24 | 330 | 1.1E-79 | IPR003726 |
| SUPERFAMILY | SSF82282 | Homocysteine S-methyltransferase | 19 | 335 | 3.27E-85 | IPR036589 |
| Gene3D | G3DSA:3.20.20.330 | - | 12 | 331 | 5.3E-106 | IPR036589 |
| PIRSF | PIRSF037505 | BHMT | 14 | 211 | 6.7E-7 | IPR017226 |
| PIRSF | PIRSF037505 | BHMT | 290 | 340 | 3.0 | IPR017226 |
| ProSiteProfiles | PS50970 | Homocysteine-binding domain profile. | 11 | 333 | 48.253983 | IPR003726 |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G63250.1 | homocysteine methyltransferase 2. Encodes a homocysteine methyltransferase (HMT). Among the three HMT coding genes in the genome, HMT2 is responsible for a significant proportion of HMT activity in the flower stalks and silique hulls. However, HMT2 does not significantly contribute to the total HMT activity in seeds. | 0 |
| RefSeq | XP_002300824.4 | homocysteine S-methyltransferase 2 isoform X1 [Populus trichocarpa] | 0 |
| Q9M1W4 | Homocysteine S-methyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=HMT-2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2K0A5 | Homocysteine S-methyltransferase 2 isoform X1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology