Basic Information
Locus ID:
nbisL1-mrna-21249
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002088F_pilon | 419250 | 420224 | + | nbisL1-mrna-21249 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 36,114.60 Da | 35.11 | 75.43 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01344 | Kelch motif | 168 | 202 | 4.4E-8 | IPR006652 |
| Pfam | PF00646 | F-box domain | 6 | 48 | 4.5E-4 | IPR001810 |
| Pfam | PF01344 | Kelch motif | 112 | 153 | 3.2E-9 | IPR006652 |
| SUPERFAMILY | SSF81383 | F-box domain | 4 | 57 | 4.19E-9 | IPR036047 |
| SUPERFAMILY | SSF117281 | Kelch motif | 80 | 302 | 4.71E-37 | IPR015915 |
| Gene3D | G3DSA:2.120.10.80 | - | 21 | 304 | 3.0E-39 | IPR015915 |
| SMART | SM00612 | kelc_smart | 118 | 166 | 6.1E-8 | IPR006652 |
| SMART | SM00612 | kelc_smart | 169 | 216 | 9.2E-7 | IPR006652 |
| SMART | SM00256 | fbox_2 | 8 | 48 | 4.4E-6 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80440.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_002517518.1 | F-box/kelch-repeat protein At1g80440 [Ricinus communis] | 0 |
| Q9M8L2 | F-box/kelch-repeat protein At1g80440 OS=Arabidopsis thaliana OX=3702 GN=At1g80440 PE=2 SV=1 | 0 | |
| TrEMBL | B9RUU9 | F-box/kelch-repeat protein At1g80440-like OS=Ricinus communis OX=3988 GN=RCOM_0894530 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology