Basic Information
Locus ID:
nbisL1-mrna-21189
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000235F_pilon | 1079322 | 1080449 | - | nbisL1-mrna-21189 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 41,510.11 Da | 64.02 | 69.17 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 160 | 203 | 6.91238E-17 | - |
| Pfam | PF13639 | Ring finger domain | 160 | 203 | 6.9E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 155 | 209 | 1.06E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 136 | 212 | 1.9E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 161 | 202 | 1.8E-7 | IPR001841 |
| SMART | SM01197 | FANCL_C_2 | 157 | 210 | 0.0067 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 161 | 203 | 12.872856 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 237 | 284 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 309 | 338 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 237 | 279 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33565.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_002522602.2 | RING-H2 finger protein ATL54 [Ricinus communis] | 0 |
| Q8LFY8 | RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2MLC4 | RING-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology