Basic Information
Locus ID:
nbisL1-mrna-2117
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000017F_pilon | 7292252 | 7296274 | - | nbisL1-mrna-2117 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.97 | 40,190.25 Da | 24.69 | 77.65 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 139 | 175 | 2.3E-4 | IPR001680 |
| Pfam | PF18044 | CCCH-type zinc finger | 110 | 129 | 1.8E-8 | IPR041367 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 126 | 355 | 1.1E-28 | IPR036322 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 106 | 130 | 2.09E-7 | IPR036855 |
| Gene3D | G3DSA:2.130.10.10 | - | 129 | 297 | 2.0E-21 | IPR015943 |
| Gene3D | G3DSA:4.10.1000.10 | - | 105 | 128 | 3.6E-6 | - |
| SMART | SM00320 | WD40_4 | 136 | 175 | 9.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 259 | 323 | 8.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 215 | 252 | 4.4 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 27 | 52 | 0.47 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 107 | 131 | 4.6E-6 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 143 | 175 | 10.917412 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 105 | 132 | 15.703835 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 27 | 53 | 9.563363 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 143 | 184 | 13.883689 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_021615892.1 | zinc finger CCCH domain-containing protein 48 isoform X2 [Manihot esculenta] | 0 |
| Q9FNZ2 | Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana OX=3702 GN=ZFWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2M7Y4 | Uncharacterized protein MANES_06G142500 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology