Basic Information
Locus ID:
nbisL1-mrna-21156
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
WD-40 repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000088F_pilon | 1229411 | 1232185 | - | nbisL1-mrna-21156 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.81 | 44,448.43 Da | 41.38 | 77.44 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 238 | 274 | 0.075 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 293 | 319 | 0.26 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 340 | 375 | 0.0012 | IPR001680 |
| Pfam | PF12265 | Histone-binding protein RBBP4 or subunit C of CAF1 complex | 23 | 96 | 5.9E-22 | IPR022052 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 127 | 379 | 8.4E-34 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 283 | 395 | 5.3E-35 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 5 | 282 | 9.3E-64 | IPR015943 |
| SMART | SM00320 | WD40_4 | 280 | 319 | 0.032 | IPR001680 |
| SMART | SM00320 | WD40_4 | 185 | 225 | 2.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 234 | 274 | 8.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 336 | 376 | 0.0042 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 286 | 321 | 8.57106 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 343 | 377 | 8.937796 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 192 | 227 | 9.361965 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 192 | 227 | 11.176815 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 286 | 321 | 10.174269 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 306 | 320 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 212 | 226 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 363 | 377 | 2.4E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 212 | 226 | 2.4E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 306 | 320 | 2.4E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G16780.1 | Transducin family protein / WD-40 repeat family protein. Encodes a WD-40 repeat protein similar to yeast MSI1. | 0 |
| RefSeq | XP_011046680.1 | PREDICTED: WD-40 repeat-containing protein MSI2-like [Populus euphratica] | 0 |
| O22468 | WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana OX=3702 GN=MSI2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2J0N7 | WD-40 repeat-containing protein MSI2-like OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology