Basic Information
Locus ID:
nbisL1-mrna-21149
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000088F_pilon | 1186234 | 1197223 | + | nbisL1-mrna-21149 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.61 | 223,472.38 Da | 47.87 | 84.81 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1481 | 1878 | 1.25754E-109 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1529 | 1879 | 9.5E-69 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1473 | 1879 | 5.23E-86 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 190 | 663 | 2.84E-41 | IPR016024 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1421 | 1662 | 7.8E-43 | - |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1771 | 1881 | 4.5E-24 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 180 | 487 | 7.0E-53 | IPR011989 |
| SMART | SM00119 | hect_3 | 1492 | 1900 | 7.7E-67 | IPR000569 |
| SMART | SM00185 | arm_5 | 221 | 262 | 66.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 264 | 305 | 56.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 347 | 385 | 8.7 | IPR000225 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1505 | 1879 | 49.499527 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1002 | 1101 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 67 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1287 | 1314 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 676 | 692 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1057 | 1082 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1143 | 1178 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1083 | 1101 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1146 | 1178 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 121 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 693 | 713 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1002 | 1033 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 133 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2041 | 2065 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 665 | 713 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_011046281.1 | PREDICTED: E3 ubiquitin-protein ligase UPL3-like [Populus euphratica] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7N2RDU6 | HECT-type E3 ubiquitin transferase OS=Quercus lobata OX=97700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology