Basic Information
Locus ID:
nbisL1-mrna-21143
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 3901841 | 3905639 | - | nbisL1-mrna-21143 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.01 | 96,126.94 Da | 36.19 | 103.83 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 491 | 550 | 1.1E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 345 | 403 | 2.5E-7 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 250 | 272 | 1.5 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 708 | 789 | 1.0E-11 | IPR000719 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 37 | 76 | 3.0E-4 | IPR013210 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 699 | 792 | 8.08E-18 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 368 | 627 | 4.76E-53 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 84 | 406 | 1.96E-63 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 292 | 367 | 1.8E-18 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 368 | 634 | 5.3E-78 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 35 | 192 | 1.2E-40 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 670 | 783 | 3.2E-21 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 193 | 291 | 2.9E-30 | IPR032675 |
| SMART | SM00219 | tyrkin_6 | 706 | 861 | 1.5E-4 | IPR020635 |
| SMART | SM00369 | LRR_typ_2 | 513 | 537 | 21.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 561 | 585 | 100.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 344 | 368 | 13.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 248 | 272 | 130.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 369 | 391 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 296 | 320 | 220.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 706 | 872 | 11.199088 | IPR000719 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 537 | 550 | 7.9E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 371 | 384 | 7.9E-5 | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G20270.1 | Leucine-rich receptor-like protein kinase family protein. Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. | 0 |
| RefSeq | XP_002304615.2 | leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Populus trichocarpa] | 0 |
| O65440 | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 OS=Arabidopsis thaliana OX=3702 GN=BAM3 PE=1 SV=3 | 0 | |
| TrEMBL | A0A5N5P3H3 | Protein kinase domain-containing protein OS=Salix brachista OX=2182728 GN=DKX38_000510 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology