Basic Information
Locus ID:
nbisL1-mrna-21134
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Transcription factor IIIC subunit delta N-term
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000235F_pilon | 450816 | 459574 | + | nbisL1-mrna-21134 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.63 | 93,087.52 Da | 54.00 | 99.24 | 0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 273 | 313 | 1.7E-4 | IPR001680 |
| Pfam | PF12657 | Transcription factor IIIC subunit delta N-term | 14 | 184 | 5.9E-13 | IPR024761 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 13 | 383 | 1.53E-14 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 4 | 380 | 1.6E-18 | IPR015943 |
| SMART | SM00320 | WD40_4 | 3 | 41 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 269 | 314 | 0.0021 | IPR001680 |
| SMART | SM00320 | WD40_4 | 85 | 132 | 32.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 213 | 252 | 83.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 300 | 313 | 8.770704 | IPR001680 |
| Coils | Coil | Coil | 698 | 718 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G49400.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_002317805.4 | uncharacterized protein LOC7464306 isoform X1 [Populus trichocarpa] | 0 |
| TrEMBL | A0A2P2MFC5 | Transducin family protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg2131 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_3362 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah018510, Ah033723 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg14966, Sbi_jg55784 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26292 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017840 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl01223, Sgl06301, Sgl06308 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000002917, gene:ENSEOMG00000045730 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0006040, CQ.Regalona.r1.3BG0006170 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30165550 |
| Apiaceae | Apium graveolens | 1 | Ag4G02613 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G016380 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103720062 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.3036.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G28369 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G49400.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10010115m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g12670.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g048260.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1675 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1809 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno12g03940 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0082s00020.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate05g28360, gene.Thate05g28370, gene.Thate07g18610 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1261 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00011081 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G24114, Lb4G24115 |
| Poaceae | Echinochloa crus-galli | 4 | AH01.1336, AH02.2879, BH02.2966, CH02.3568 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_1BG0080170 |
| Poaceae | Hordeum vulgare | 4 | HORVU.MOREX.r3.3HG0283140.1, HORVU.MOREX.r3.3HG0283190.1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_054781, gene-QYE76_067111 |
| Poaceae | Oryza coarctata | 2 | Oco01G018260, Oco02G018490 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g50690.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G127700 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0102988, Pt_Chr0106707, Pt_Chr0302309 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G013550, Chr03G014300, Chr05G021790, Chr08G014560 |
| Poaceae | Thinopyrum elongatum | 6 | Tel3E01G428500, Tel5E01G056200, Tel5E01G056300 ... |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC3AG038200, gene_TRIDC3BG042950 ... |
| Poaceae | Triticum aestivum | 8 | TraesCS3A02G254800.1, TraesCS3B02G286800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb062490_P003, Zm00001eb211870_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-26233, nbis-gene-26234 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g10965 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.1372, evm.TU.LG09.598 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g16470 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1074 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-6533 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12584 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21134 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.867 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016263 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11052 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13282 |
| Salicaceae | Populus euphratica | 1 | populus_peu29410 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132603565 |
| Solanaceae | Solanum chilense | 1 | SOLCI002704900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107021328 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3973 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G1250 |
| Zosteraceae | Zostera marina | 1 | Zosma05g12380.v3.1 |