Basic Information
Locus ID:
nbisL1-mrna-21129
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr09 | 5919814 | 5923003 | + | nbisL1-mrna-21129 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.03 | 111,370.58 Da | 31.53 | 103.79 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 178 | 199 | 0.026 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 537 | 596 | 1.5E-8 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 36 | 77 | 8.0E-9 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 717 | 986 | 1.6E-47 | IPR000719 |
| SUPERFAMILY | SSF52047 | RNI-like | 288 | 598 | 3.22E-63 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 715 | 989 | 8.34E-72 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 51 | 356 | 4.42E-53 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 798 | 1013 | 3.1E-59 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 192 | 289 | 4.8E-32 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 290 | 387 | 6.5E-29 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 388 | 629 | 2.6E-63 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 713 | 797 | 1.5E-19 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 35 | 191 | 4.4E-40 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 295 | 319 | 35.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 199 | 223 | 19.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 559 | 583 | 270.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 343 | 367 | 12.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 464 | 487 | 210.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 175 | 198 | 380.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 713 | 989 | 1.6E-34 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 439 | 462 | 43.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 713 | 1014 | 39.22681 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 719 | 743 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 840 | 852 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28650.1 | Leucine-rich repeat transmembrane protein kinase family protein. | 0 |
| RefSeq | XP_034916139.1 | MDIS1-interacting receptor like kinase 1 [Populus alba] | 0 |
| Q9M0G7 | MDIS1-interacting receptor like kinase 1 OS=Arabidopsis thaliana OX=3702 GN=MIK1 PE=1 SV=1 | 0 | |
| TrEMBL | B9GRD1 | Protein kinase domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G256500 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology