Basic Information
Locus ID:
nbisL1-mrna-21124
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000235F_pilon | 384741 | 404431 | - | nbisL1-mrna-21124 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.86 | 106,832.05 Da | 45.57 | 81.86 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02659 | peptidase_C19C | 1 | 316 | 1.71232E-156 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 1 | 311 | 2.7E-38 | IPR001394 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 677 | 886 | 3.0E-57 | IPR029346 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 415 | 667 | 3.0E-74 | IPR024729 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 1 | 343 | 3.53E-87 | IPR038765 |
| Gene3D | G3DSA:3.10.20.90 | - | 475 | 592 | 8.8E-44 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 593 | 690 | 4.4E-27 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 1 | 315 | 2.6E-79 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 1 | 314 | 34.953323 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 230 | 247 | - | IPR018200 |
| Coils | Coil | Coil | 327 | 355 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.1 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_021617625.1 | ubiquitin C-terminal hydrolase 12 isoform X2 [Manihot esculenta] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2MFP2 | ubiquitinyl hydrolase 1 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology