Basic Information
Locus ID:
nbisL1-mrna-2112
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 20194973 | 20196274 | - | nbisL1-mrna-2112 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.05 | 48,320.66 Da | 60.33 | 77.83 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 384 | 426 | 1.05165E-18 | - |
| Pfam | PF13639 | Ring finger domain | 385 | 426 | 5.8E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 364 | 430 | 1.59E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 348 | 432 | 3.2E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 385 | 425 | 4.9E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 385 | 426 | 12.046688 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 255 | 276 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02340.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021689685.1 | E3 ubiquitin-protein ligase CIP8 [Hevea brasiliensis] | 0 |
| O22283 | Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana OX=3702 GN=RHC2A PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A6MES7 | RING-type domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_032128 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.1666 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-1967, nbisL1-mrna-2112 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9691 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2869 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000019l.102 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18856 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13031 |