Basic Information
Locus ID:
nbisL1-mrna-21097
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Ubiquitin fusion degradation protein 1 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000088F_pilon | 886439 | 889385 | - | nbisL1-mrna-21097 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 35,611.04 Da | 54.33 | 62.78 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 13 | 184 | 4.9E-80 | IPR004854 |
| Gene3D | G3DSA:3.10.330.10 | - | 109 | 182 | 1.6E-34 | - |
| Gene3D | G3DSA:2.40.40.50 | - | 6 | 107 | 1.8E-43 | IPR042299 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 272 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 228 | 317 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 280 | 307 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21270.1 | ubiquitin fusion degradation 1. | 0 |
| RefSeq | XP_034927692.1 | ubiquitin fusion degradation protein 1 homolog isoform X2 [Populus alba] | 0 |
| P70362 | Ubiquitin recognition factor in ER-associated degradation protein 1 OS=Mus musculus OX=10090 GN=Ufd1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2LDP4 | Ubiquitin fusion degradation protein 1 homolog OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology