Basic Information
Locus ID:
nbisL1-mrna-21096
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
PB1 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr09 | 5632953 | 5640008 | - | nbisL1-mrna-21096 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.86 | 144,260.94 Da | 46.65 | 76.21 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06410 | PB1_UP2 | 213 | 309 | 6.27507E-45 | - |
| CDD | cd13999 | STKc_MAP3K-like | 1029 | 1286 | 3.41684E-110 | - |
| Pfam | PF00564 | PB1 domain | 226 | 308 | 4.5E-19 | IPR000270 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 1025 | 1286 | 2.8E-63 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 996 | 1285 | 1.52E-77 | IPR011009 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 225 | 310 | 7.85E-20 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1111 | 1310 | 3.4E-54 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1016 | 1110 | 1.2E-25 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 228 | 310 | 2.7E-12 | - |
| SMART | SM00220 | serkin_6 | 1023 | 1292 | 6.7E-57 | IPR000719 |
| SMART | SM00666 | PB1_new | 224 | 311 | 7.4E-30 | IPR000270 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1023 | 1293 | 40.4706 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1029 | 1050 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1148 | 1160 | - | IPR008271 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1105 | 1118 | 1.2E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1142 | 1160 | 1.2E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1213 | 1235 | 1.2E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1257 | 1279 | 1.2E-13 | IPR001245 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G24715.1 | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain. | 0 |
| RefSeq | XP_021630743.2 | uncharacterized protein LOC110628407 [Manihot esculenta] | 0 |
| Q9SAJ2 | RAF-like serine/threonine-protein kinase 20 OS=Arabidopsis thaliana OX=3702 GN=RAF20 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2IMV1 | Uncharacterized protein MANES_12G042400 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology