Basic Information
Locus ID:
nbisL1-mrna-21074
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000088F_pilon | 763683 | 767032 | + | nbisL1-mrna-21074 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.62 | 33,275.49 Da | 55.48 | 64.23 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01426 | BAH domain | 22 | 136 | 4.9E-22 | IPR001025 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 131 | 170 | 3.77E-7 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 212 | 241 | 4.65E-6 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 134 | 197 | 1.1E-8 | IPR013083 |
| Gene3D | G3DSA:2.30.30.490 | - | 6 | 133 | 5.7E-31 | IPR043151 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 209 | 254 | 4.8E-8 | IPR013083 |
| SMART | SM00439 | BAH_4 | 21 | 137 | 2.1E-40 | IPR001025 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 21 | 137 | 23.710213 | IPR001025 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22140.2 | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein. | 0 |
| RefSeq | XP_021669760.1 | chromatin remodeling protein SHL-like [Hevea brasiliensis] | 0 |
| F4JL28 | Chromatin remodeling protein EBS OS=Arabidopsis thaliana OX=3702 GN=EBS PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2LDI2 | Chromatin remodeling protein SHL-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology