Basic Information
Locus ID:
nbisL1-mrna-21003
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000883F_pilon | 2166156 | 2171991 | - | nbisL1-mrna-21003 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.83 | 69,170.16 Da | 29.81 | 90.58 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 28 | 189 | 1.26084E-90 | - |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 222 | 339 | 1.6E-21 | IPR012000 |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 25 | 192 | 3.4E-34 | IPR012001 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 211 | 365 | 1.7E-33 | IPR029035 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 25 | 204 | 7.7E-44 | IPR029061 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 387 | 546 | 7.44E-21 | IPR029061 |
| Gene3D | G3DSA:3.40.50.970 | - | 433 | 534 | 7.3E-24 | - |
| Gene3D | G3DSA:3.40.50.1220 | - | 212 | 374 | 2.8E-41 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 379 | 432 | 6.4E-6 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 22 | 197 | 5.5E-60 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 431 | 547 | 7.6E-33 | IPR012110 |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 20 | 432 | 2.4E-145 | IPR012110 |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01320.1 | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein. | 0 |
| RefSeq | XP_021636561.1 | pyruvate decarboxylase 1-like [Hevea brasiliensis] | 0 |
| P51850 | Pyruvate decarboxylase 1 OS=Pisum sativum OX=3888 GN=PDC1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2ISH4 | pyruvate decarboxylase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology