Basic Information
Locus ID:
nbisL1-mrna-21000
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000088F_pilon | 325519 | 329484 | + | nbisL1-mrna-21000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 99,501.14 Da | 36.56 | 91.83 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 587 | 860 | 2.04533E-93 | - |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 25 | 62 | 3.1E-7 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 113 | 150 | 6.9E-9 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 323 | 361 | 0.2 | IPR013210 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 583 | 855 | 4.2E-48 | IPR001245 |
| SUPERFAMILY | SSF52058 | L domain-like | 37 | 302 | 3.49E-45 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 325 | 433 | 7.18E-17 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 558 | 857 | 1.2E-79 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 323 | 448 | 1.4E-31 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 24 | 319 | 1.5E-73 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 659 | 882 | 1.7E-58 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 544 | 658 | 1.7E-35 | - |
| SMART | SM00369 | LRR_typ_2 | 387 | 410 | 130.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 135 | 160 | 100.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 88 | 110 | 28.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 111 | 134 | 0.014 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 184 | 207 | 120.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 411 | 435 | 110.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 581 | 865 | 7.5E-46 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 581 | 861 | 41.91227 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 587 | 609 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 706 | 718 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 903 | 926 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 446 | 477 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23750.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_002308106.2 | receptor-like kinase TMK4 [Populus trichocarpa] | 0 |
| Q9LK43 | Receptor-like kinase TMK4 OS=Arabidopsis thaliana OX=3702 GN=TMK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T2WKZ6 | Protein kinase domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_029118 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology