halophFGD

Basic Information

Locus ID: nbisL1-mrna-20994

Species & Taxonomic ID: Rhizophora apiculata & 106626

Genome Assembly: GCA_037832385.1

Description: E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr7	5208008	5209487	-	nbisL1-mrna-20994

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.28	19,050.85 Da	33.84	67.86	-0.48

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF03145	Seven in absentia protein family	41	136	1.6E-25	IPR018121
SUPERFAMILY	SSF49599	TRAF domain-like	53	155	5.04E-19	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	47	107	2.7E-15	IPR013083
ProSiteProfiles	PS51081	Zinc finger SIAH-type profile.	52	112	12.897089	IPR013010

Gene Ontology

Biological Process:

GO:0006511 (ubiquitin-dependent protein catabolic process) GO:0007275 (multicellular organism development)

Molecular Function:

GO:0008270 (zinc ion binding)

Cellular Component:

GO:0005737 (cytoplasm)

KEGG Pathway

KO Term:

K04506 (E3 ubiquitin-protein ligase SIAH1 [EC:2.3.2.27])

Pathway:

ko04013 (MAPK signaling pathway - fly) map04013 (MAPK signaling pathway - fly) map04115 (p53 signaling pathway) ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis) ko04310 (Wnt signaling pathway) map04310 (Wnt signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G58040.2	-
RefSeq	XP_010473791.1	PREDICTED: E3 ubiquitin-protein ligase SINAT3 [Camelina sativa]
Swiss-Prot	Q9M2P4	E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana OX=3702 GN=SINAT2 PE=1 SV=1
TrEMBL	A0A1R3GPA5	RING-type E3 ubiquitin transferase OS=Corchorus olitorius OX=93759 GN=COLO4_34000 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg30805, jg30806, jg39843
Aizoaceae	Mesembryanthemum crystallinum	1	gene_23891
Amaranthaceae	Atriplex hortensis	1	Ah035556
Amaranthaceae	Beta vulgaris	2	BVRB_2g027530, BVRB_2g027540
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg21937, Sbi_jg29589
Amaranthaceae	Salicornia europaea	1	Seu_jg15805
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00008444
Amaranthaceae	Suaeda glauca	2	Sgl62204, Sgl66766
Amaranthaceae	Chenopodium album	4	gene:ENSEOMG00000020508, gene:ENSEOMG00000020557 ... gene:ENSEOMG00000038298, gene:ENSEOMG00000051087
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.2AG0018660, CQ.Regalona.r1.2BG0020330
Anacardiaceae	Pistacia vera	2	pistato.v30190790, pistato.v30190810
Apiaceae	Apium graveolens	1	Ag5G00437
Arecaceae	Phoenix dactylifera	3	gene-LOC103722981, gene-LOC103722993, gene-LOC120111461
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.2924.V1.1, AsparagusV1_08.2602.V1.1 ... AsparagusV1_10.90.V1.1
Asteraceae	Flaveria trinervia	5	Ftri17G20592, Ftri18G09587, Ftri18G29975, Ftri1G07938 ... Ftri1G27743
Brassicaceae	Arabidopsis thaliana	11	AT1G66610.1, AT1G66620.1, AT1G66630.1, AT1G66650.1 ... AT1G66660.2, AT5G37870.1, AT5G37890.1, AT5G37900.1, AT5G37910.1, AT5G37930.1, AT5G62800.1
Brassicaceae	Eutrema salsugineum	14	Thhalv10006392m.g.v1.0, Thhalv10018712m.g.v1.0 ... Thhalv10018780m.g.v1.0, Thhalv10018806m.g.v1.0, Thhalv10027819m.g.v1.0, Thhalv10027852m.g.v1.0, Thhalv10027864m.g.v1.0, Thhalv10027865m.g.v1.0, Thhalv10027866m.g.v1.0, Thhalv10028143m.g.v1.0, Thhalv10028190m.g.v1.0, Thhalv10028216m.g.v1.0, Thhalv10028229m.g.v1.0, Thhalv10028270m.g.v1.0
Brassicaceae	Schrenkiella parvula	9	Sp5g21600.v2.2, Sp5g21605.v2.2, Sp5g24750.v2.2 ... Sp7g04030.v2.2, Sp7g04040.v2.2, Sp7g04090.v2.2, Sp7g04100.v2.2, Sp7g04150.v2.2, Sp7g05350.v2.2
Brassicaceae	Brassica nigra	27	BniB01g018220.2N, BniB01g018240.2N, BniB01g023990.2N ... BniB01g024020.2N, BniB01g024030.2N, BniB01g029970.2N, BniB01g030030.2N, BniB03g030600.2N, BniB03g043740.2N, BniB03g043780.2N, BniB03g047180.2N, BniB03g047240.2N, BniB04g025010.2N, BniB05g045260.2N, BniB06g059590.2N, BniB06g060590.2N, BniB08g019710.2N, BniB08g030190.2N, BniB08g041480.2N, BniB08g047370.2N, BniB08g050920.2N, BniB08g060560.2N, BniB08g060600.2N, BniB08g060630.2N, BniB08g060660.2N, BniB08g060700.2N, BniB08g070520.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq08G0675
Casuarinaceae	Casuarina glauca	1	Cgl08G0653
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno09g08510
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g06430, gene.Thate06g12290
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-3722
Nitrariaceae	Nitraria sibirica	17	evm.TU.LG02.527, evm.TU.LG02.536, evm.TU.LG02.537 ... evm.TU.LG02.538, evm.TU.LG02.540, evm.TU.LG02.541, evm.TU.LG02.543, evm.TU.LG02.544, evm.TU.LG02.545, evm.TU.LG02.546, evm.TU.LG02.547, evm.TU.LG02.548, evm.TU.LG02.549, evm.TU.LG02.550, evm.TU.LG02.552, evm.TU.LG02.553, evm.TU.LG06.505
Plantaginaceae	Plantago ovata	14	Pov_00001204, Pov_00005327, Pov_00013832, Pov_00013834 ... Pov_00013837, Pov_00013840, Pov_00013844, Pov_00013845, Pov_00013847, Pov_00013856, Pov_00013860, Pov_00013861, Pov_00013865, Pov_00013866
Plumbaginaceae	Limonium bicolor	4	Lb2G12968, Lb2G15499, Lb3G19694, Lb6G29729
Poaceae	Echinochloa crus-galli	51	AH01.1327, AH02.1233, AH02.1239, AH02.1241, AH02.1244 ... AH02.1246, AH02.1247, AH05.1007, AH05.1011, AH05.1037, AH05.1038, AH05.1039, AH05.969, AH07.590, BH01.1379, BH02.843, BH02.844, BH02.846, BH02.854, BH03.4053, BH04.2232, BH05.1052, BH05.1053, BH05.1054, BH05.1055, BH05.1057, BH05.1060, BH05.1063, BH05.1092, BH05.1093, BH05.3412, CH01.1424, CH02.962, CH02.964, CH02.966, CH02.967, CH02.970, CH02.978, CH05.1204, CH05.1205, CH05.1207, CH05.1208, CH05.1213, CH05.1237, CH05.1238, CH05.1239, CH05.1244, CH05.2239, CH05.3026, CH05.3540, CH06.2875
Poaceae	Eleusine coracana subsp. coracana	30	gene-QOZ80_1AG0007790, gene-QOZ80_1AG0007900 ... gene-QOZ80_1AG0007910, gene-QOZ80_1AG0007930, gene-QOZ80_1AG0007950, gene-QOZ80_1BG0056590, gene-QOZ80_1BG0056670, gene-QOZ80_1BG0056700, gene-QOZ80_1BG0056720, gene-QOZ80_1BG0070620, gene-QOZ80_3AG0223970, gene-QOZ80_3AG0224010, gene-QOZ80_3BG0268960, gene-QOZ80_5AG0389680, gene-QOZ80_5AG0403990, gene-QOZ80_5AG0404500, gene-QOZ80_5AG0404510, gene-QOZ80_5AG0404520, gene-QOZ80_5AG0404570, gene-QOZ80_5AG0404590, gene-QOZ80_5AG0404630, gene-QOZ80_5BG0437850, gene-QOZ80_5BG0449780, gene-QOZ80_5BG0452420, gene-QOZ80_5BG0452620, gene-QOZ80_5BG0452630, gene-QOZ80_5BG0452690, gene-QOZ80_5BG0452740, gene-QOZ80_5BG0452760, gene-QOZ80_UnG0729530
Poaceae	Hordeum vulgare	13	HORVU.MOREX.r3.1HG0013070.1, HORVU.MOREX.r3.3HG0223150.1 ... HORVU.MOREX.r3.3HG0223200.1, HORVU.MOREX.r3.3HG0223300.1, HORVU.MOREX.r3.3HG0223310.1, HORVU.MOREX.r3.3HG0223360.1, HORVU.MOREX.r3.3HG0223750.1, HORVU.MOREX.r3.3HG0223800.1, HORVU.MOREX.r3.3HG0235620.1, HORVU.MOREX.r3.3HG0235800.1, HORVU.MOREX.r3.4HG0384800.1, HORVU.MOREX.r3.4HG0414910.1, HORVU.MOREX.r3.7HG0650080.1
Poaceae	Lolium multiflorum	34	gene-QYE76_009611, gene-QYE76_009613, gene-QYE76_009622 ... gene-QYE76_009625, gene-QYE76_010119, gene-QYE76_010134, gene-QYE76_010144, gene-QYE76_020014, gene-QYE76_030516, gene-QYE76_030532, gene-QYE76_037663, gene-QYE76_037672, gene-QYE76_043642, gene-QYE76_043644, gene-QYE76_049123, gene-QYE76_049142, gene-QYE76_049154, gene-QYE76_049179, gene-QYE76_049678, gene-QYE76_049681, gene-QYE76_049698, gene-QYE76_049703, gene-QYE76_049706, gene-QYE76_049708, gene-QYE76_049846, gene-QYE76_062461, gene-QYE76_062835, gene-QYE76_062952, gene-QYE76_063574, gene-QYE76_068175, gene-QYE76_069555, gene-QYE76_071611, gene-QYE76_071746, gene-QYE76_071756
Poaceae	Oryza coarctata	7	Oco01G000900, Oco01G000930, Oco01G020900, Oco06G015220 ... Oco10G002600, Oco11G008040, Oco11G009150
Poaceae	Oryza sativa	13	LOC_Os01g03270.1, LOC_Os01g03290.1, LOC_Os01g03400.1 ... LOC_Os01g03410.1, LOC_Os01g03420.1, LOC_Os01g03429.1, LOC_Os01g03464.1, LOC_Os01g55640.1, LOC_Os05g06060.1, LOC_Os05g06070.1, LOC_Os05g06080.1, LOC_Os05g06100.1, LOC_Os06g20610.1
Poaceae	Paspalum vaginatum	20	gene-BS78_01G213800, gene-BS78_03G081700, gene-BS78_K088300 ... gene-BS78_03G082000, gene-BS78_03G082100, gene-BS78_03G082500, gene-BS78_08G061600, gene-BS78_09G048400, gene-BS78_09G048500, gene-BS78_09G048900, gene-BS78_09G049300, gene-BS78_09G050000, gene-BS78_09G050100, gene-BS78_09G050200, gene-BS78_09G050300, gene-BS78_09G050500, gene-BS78_09G050600, gene-BS78_09G051200, gene-BS78_K165400, gene-BS78_K166000
Poaceae	Puccinellia tenuiflora	16	Pt_Chr0100977, Pt_Chr0101898, Pt_Chr0201378, Pt_Chr0205484 ... Pt_Chr0205490, Pt_Chr0205491, Pt_Chr0205492, Pt_Chr0205509, Pt_Chr0206957, Pt_Chr0206965, Pt_Chr0206971, Pt_Chr0302981, Pt_Chr0306694, Pt_Chr0501962, Pt_Chr0501964, Pt_Chr0501966
Poaceae	Sporobolus alterniflorus	13	Chr02G024560, Chr02G024570, Chr02G024990, Chr02G025000 ... Chr03G003320, Chr03G003330, Chr03G008300, Chr06G015610, Chr07G023800, Chr08G001680, Chr08G008760, Chr18G000870, Chr18G000900
Poaceae	Thinopyrum elongatum	13	Tel1E01G125400, Tel3E01G051700, Tel3E01G054600 ... Tel3E01G054700, Tel3E01G056200, Tel3E01G057400, Tel3E01G058100, Tel3E01G058400, Tel3E01G059100, Tel3E01G059200, Tel3E01G060100, Tel3E01G117700, Tel4E01G594300
Poaceae	Triticum dicoccoides	28	gene_TRIDC1BG010370, gene_TRIDC3AG000440 ... gene_TRIDC3AG003370, gene_TRIDC3AG003390, gene_TRIDC3AG003420, gene_TRIDC3AG003430, gene_TRIDC3AG003480, gene_TRIDC3AG003490, gene_TRIDC3AG003520, gene_TRIDC3AG003620, gene_TRIDC3AG005440, gene_TRIDC3AG007310, gene_TRIDC3AG007320, gene_TRIDC3AG007330, gene_TRIDC3BG002690, gene_TRIDC3BG004330, gene_TRIDC3BG004600, gene_TRIDC3BG004660, gene_TRIDC3BG004670, gene_TRIDC3BG004740, gene_TRIDC3BG004800, gene_TRIDC3BG004850, gene_TRIDC3BG006740, gene_TRIDC3BG006750, gene_TRIDC3BG006950, gene_TRIDC4BG060640, gene_TRIDC5AG075350, gene_TRIDC5AG076860
Poaceae	Triticum aestivum	54	TraesCS1A02G060800.1, TraesCS1D02G061700.1 ... TraesCS2A02G446400.1, TraesCS3A02G030100.1, TraesCS3A02G030600.1, TraesCS3A02G030800.1, TraesCS3A02G031100.1, TraesCS3A02G031200.1, TraesCS3A02G031300.1, TraesCS3A02G032100.1, TraesCS3A02G032200.1, TraesCS3A02G048300.1, TraesCS3A02G062700.1, TraesCS3A02G062800.1, TraesCS3A02G101400.1.cds1, TraesCS3A02G101600.1, TraesCS3B02G028900.1, TraesCS3B02G031200.1, TraesCS3B02G032100.1, TraesCS3B02G032300.1.cds1, TraesCS3B02G033700.1, TraesCS3B02G033800.1, TraesCS3B02G050100.1, TraesCS3B02G050200.1, TraesCS3B02G050700.1, TraesCS3B02G050900.1, TraesCS3B02G052300.1, TraesCS3B02G052400.1, TraesCS3B02G052800.1, TraesCS3B02G053000.1, TraesCS3B02G053400.1, TraesCS3B02G053500.1, TraesCS3B02G054400.1, TraesCS3B02G074800.1, TraesCS3B02G560800.1, TraesCS3D02G015600.1, TraesCS3D02G028800.1, TraesCS3D02G029000.1, TraesCS3D02G029300.1, TraesCS3D02G029400.1, TraesCS3D02G029600.1, TraesCS3D02G029700.1.cds1, TraesCS3D02G030300.1, TraesCS3D02G031300.1, TraesCS3D02G504900.1, TraesCS4A02G369000.1.cds1, TraesCS4A02G395500.1, TraesCS4A02G395600.1, TraesCS4B02G363200.1, TraesCS4D02G356400.2, TraesCS5A02G228300.1, TraesCS5A02G531400.2, TraesCS5D02G504400.1.cds1, TraesCSU02G045900.1
Poaceae	Zea mays	2	Zm00001eb125780_P001, Zm00001eb132940_P001
Poaceae	Zoysia japonica	8	nbis-gene-12472, nbis-gene-20499, nbis-gene-20501 ... nbis-gene-25148, nbis-gene-32263, nbis-gene-44490, nbis-gene-54993, nbis-gene-6496
Poaceae	Zoysia macrostachya	2	Zma_g25734, Zma_g3175
Portulacaceae	Portulaca oleracea	2	evm.TU.LG06.837, evm.TU.LG11.18
Posidoniaceae	Posidonia oceanica	4	gene.Posoc04g03610, gene.Posoc04g21270, gene.Posoc07g01530 ... gene.Posoc07g01540
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_3_RagTag.729, evm.TU.Scaffold_6_RagTag.1280
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-1231, nbisL1-mrna-16249
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-12003, nbisL1-mrna-12004
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-1103, nbisL1-mrna-6412
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000011l.825, evm.TU.utg000019l.771
Rhizophoraceae	Kandelia obovata	2	Maker00008402, Maker00012939
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-13476, nbisL1-mrna-20994, nbisL1-mrna-5239
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-3974
Salicaceae	Populus euphratica	6	populus_peu09613, populus_peu09614, populus_peu09811 ... populus_peu24645, populus_peu24925, populus_peu35231
Solanaceae	Lycium barbarum	2	gene-LOC132616740, gene-LOC132617121
Solanaceae	Solanum chilense	2	SOLCI002214900, SOLCI005012100
Solanaceae	Solanum pennellii	2	gene-LOC107014420, gene-LOC107015388
Tamaricaceae	Reaumuria soongarica	5	MSTRG.378_chr01_+, MSTRG.379_chr01_+, STRG.16702_chr08_- ... STRG.870_chr01_-, gene_7113
Tamaricaceae	Tamarix chinensis	2	TC01G0208, TC05G1391
Zosteraceae	Zostera marina	1	Zosma01g06640.v3.1