Basic Information
Locus ID:
nbisL1-mrna-20978
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Peroxisome biogenesis protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000883F_pilon | 1917892 | 1918848 | - | nbisL1-mrna-20978 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.46 | 35,632.62 Da | 44.44 | 78.11 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 143 | 179 | 0.0025 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 229 | 266 | 1.5E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 188 | 222 | 0.0035 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 98 | 135 | 0.0064 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 58 | 90 | 0.28 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 11 | 309 | 4.37E-56 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 3 | 310 | 4.4E-85 | IPR015943 |
| SMART | SM00320 | WD40_4 | 270 | 310 | 22.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 226 | 266 | 4.4E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 96 | 136 | 1.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 182 | 222 | 2.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 139 | 179 | 8.3E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 51 | 90 | 0.026 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 189 | 231 | 10.70896 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 146 | 188 | 11.510997 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 103 | 138 | 9.256512 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 146 | 181 | 9.493783 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 233 | 266 | 11.243651 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 233 | 266 | 9.414692 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 189 | 225 | 8.729241 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 103 | 145 | 12.079106 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 209 | 223 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 209 | 223 | 5.8E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 123 | 137 | 5.8E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 166 | 180 | 5.8E-7 | IPR020472 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G29260.1 | peroxin 7. Encodes the peroxisomal targeting signal type 2 receptor that facilitates peroxisomal protein translocation. It recognizes proteins with the PTS2 consensus sequence (RLX5HL or a variant) within the first 30 or so amino acids. RNAi experiments suggest that PEX7 is necessary for the maintenance of glyoxysomal but not leaf peroxisomal function. | 0 |
| RefSeq | XP_034918491.1 | peroxisome biogenesis protein 7-like [Populus alba] | 0 |
| Q9XF57 | Peroxisome biogenesis protein 7 OS=Arabidopsis thaliana OX=3702 GN=PEX7 PE=1 SV=2 | 0 | |
| TrEMBL | A0A4U5QIP5 | Peroxin-7 OS=Populus alba OX=43335 GN=D5086_0000081960 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg22148 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_22321 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g204030 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15867, Sbi_jg56694 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg13886 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012635 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl78224, Sgl80715 |
| Amaranthaceae | Chenopodium album | 10 | gene:ENSEOMG00000016753, gene:ENSEOMG00000028733 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.9AG0001970, CQ.Regalona.r1.9BG0020440 |
| Apiaceae | Apium graveolens | 1 | Ag6G01070 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G002540, COCNU_03G013700 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103723853 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G01280 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G29260.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10008237m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g25120.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g016740.2N, BniB04g043730.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1286 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1329 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g09620 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0059s00014.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate02g02080, gene.Thate03g19030, gene.Thate08g14580 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.820 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005587 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G24357, Lb4G24361 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.999, BH07.1113, CH07.889 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0107560, gene-QOZ80_2BG0161180 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0299280.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_021899 |
| Poaceae | Oryza coarctata | 2 | Oco03G006650, Oco04G006850 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g14790.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G101200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0206424 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G606800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG054650, gene_TRIDC3BG061230 |
| Poaceae | Triticum aestivum | 1 | TraesCS3D02G373900.1 |
| Poaceae | Zea mays | 1 | Zm00001eb238680_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-34216, nbis-gene-37356, nbis-gene-53129 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g12504 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG04.318 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g03070 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.301 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-24029 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8161 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20978 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000015l.71 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015620 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-19106 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-16828 |
| Salicaceae | Populus euphratica | 2 | populus_peu09938, populus_peu18050 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132636443 |
| Solanaceae | Solanum chilense | 1 | SOLCI002011700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015368 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.10710_chr07_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G0456 |
| Zosteraceae | Zostera marina | 1 | Zosma03g36360.v3.1 |