Basic Information
Locus ID:
nbisL1-mrna-20966
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000883F_pilon | 1785820 | 1788596 | - | nbisL1-mrna-20966 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.96 | 41,231.47 Da | 32.51 | 74.61 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 202 | 264 | 5.00323E-10 | - |
| Pfam | PF12906 | RING-variant domain | 202 | 263 | 1.3E-5 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 198 | 266 | 4.0E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 188 | 273 | 4.5E-14 | IPR013083 |
| SMART | SM00744 | ringv_2 | 201 | 264 | 2.8E-12 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 194 | 270 | 16.863119 | IPR011016 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G34200.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_021596796.1 | uncharacterized protein LOC110603391 [Manihot esculenta] | 0 |
| TrEMBL | A0A2P2NIP3 | Uncharacterized protein LOC8275155 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology