Basic Information
Locus ID:
nbisL1-mrna-20960
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Belongs to the glycosyltransferase 2 family. Plant cellulose synthase subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000883F_pilon | 1760264 | 1765152 | + | nbisL1-mrna-20960 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 33,212.18 Da | 38.94 | 80.16 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 136 | 170 | 0.024 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 91 | 126 | 0.063 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 4 | 296 | 1.83E-34 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 240 | 1.9E-32 | IPR015943 |
| SMART | SM00320 | WD40_4 | 1 | 39 | 1.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 129 | 170 | 1.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 44 | 81 | 95.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 87 | 126 | 0.02 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 137 | 179 | 9.539323 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 157 | 171 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 267 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G45760.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_012091812.1 | WD repeat-containing protein 53 [Jatropha curcas] | 0 |
| Q9DB94 | WD repeat-containing protein 53 OS=Mus musculus OX=10090 GN=Wdr53 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JI45 | WD_REPEATS_REGION domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg22166 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_458 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah017019 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g181100 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg40382, Sbi_jg50380 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg1960 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011526 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl45527, Sgl50300 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008687, gene:ENSEOMG00000032055 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.8AG0007320 |
| Apiaceae | Apium graveolens | 1 | Ag11G04857 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G001930 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103721690 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.1788.V1.1, AsparagusV1_01.1789.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G06362 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G45760.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10000923m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g10670.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g028380.2N, BniB04g016060.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1338 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1490 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g04360 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0069s00016.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g23190 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.791 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00038386 |
| Poaceae | Echinochloa crus-galli | 2 | BH02.263, CH02.302 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0002580, gene-QOZ80_1BG0051140 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0243230.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_051039 |
| Poaceae | Oryza coarctata | 1 | Oco01G004610 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g10790.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G024300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0205167, Pt_Chr0205210 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G027840, Chr05G005600 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G231100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG017670, gene_TRIDC3BG021960 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G137100.1, TraesCS3B02G155000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb120830_P005 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g9597 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG11.1669 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g17780 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-30751 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14418 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20960 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.173 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015608 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-5922 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-16844 |
| Salicaceae | Populus euphratica | 2 | populus_peu18006, populus_peu18008 |
| Solanaceae | Solanum chilense | 1 | SOLCI002538600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011204 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10597 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G0407 |
| Zosteraceae | Zostera marina | 1 | Zosma05g21170.v3.1 |