Basic Information
Locus ID:
nbisL1-mrna-20948
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Short Name:
MBD5
Description:
methyl-CpG-binding domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001373F_pilon | 1348513 | 1356679 | - | nbisL1-mrna-20948 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.47 | 59,846.90 Da | 42.33 | 69.91 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 94 | 137 | 8.84226E-16 | - |
| Pfam | PF13639 | Ring finger domain | 94 | 137 | 2.7E-13 | IPR001841 |
| Pfam | PF00121 | Triosephosphate isomerase | 448 | 492 | 2.4E-5 | IPR000652 |
| Pfam | PF01429 | Methyl-CpG binding domain | 237 | 300 | 1.2E-12 | IPR001739 |
| SUPERFAMILY | SSF57850 | RING/U-box | 94 | 144 | 5.3E-20 | - |
| SUPERFAMILY | SSF54171 | DNA-binding domain | 239 | 290 | 9.48E-16 | IPR016177 |
| SUPERFAMILY | SSF51351 | Triosephosphate isomerase (TIM) | 448 | 490 | 1.39E-6 | IPR035990 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 59 | 142 | 1.3E-19 | IPR013083 |
| Gene3D | G3DSA:3.20.20.70 | Aldolase class I | 444 | 530 | 1.1E-7 | IPR013785 |
| Gene3D | G3DSA:3.30.890.10 | - | 210 | 327 | 2.7E-19 | - |
| SMART | SM00184 | ring_2 | 95 | 136 | 1.1E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 95 | 137 | 13.094151 | IPR001841 |
| ProSiteProfiles | PS50982 | Methyl-CpG-binding domain (MBD) profile. | 233 | 310 | 14.795452 | IPR001739 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 218 | 238 | - | - |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59380.1 | methyl-CPG-binding domain 6. Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins. | 0 |
| RefSeq | XP_037493671.1 | methyl-CpG-binding domain-containing protein 5 [Jatropha curcas] | 0 |
| Q9LTJ1 | Methyl-CpG-binding domain-containing protein 6 OS=Arabidopsis thaliana OX=3702 GN=MBD6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067KHJ8 | MBD domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_11043 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg16433, jg8326 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_5889, gene_7033 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah028028, Ah028091 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_7g173840, BVRB_7g174500 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg1759, Sbi_jg1833, Sbi_jg34699, Sbi_jg34773 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg2924, Seu_jg2992 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00003136, GOSA_00003199 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl72960, Sgl73029, Sgl76501, Sgl76569 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000006886, gene:ENSEOMG00000008236 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.7AG0002260, CQ.Regalona.r1.7AG0002870 ... |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30059830, pistato.v30060300, pistato.v30064800 |
| Apiaceae | Apium graveolens | 6 | Ag10G00503, Ag11G04078, Ag2G00888, Ag5G01164, Ag6G02600 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri12G20330, Ftri14G28371, Ftri9G24900 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT3G46580.1, AT5G59380.1, AT5G59800.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10002683m.g.v1.0, Thhalv10014093m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp5g15120.v2.2, Sp6g21060.v2.2, Sp6g21470.v2.2 |
| Brassicaceae | Brassica nigra | 6 | BniB02g039000.2N, BniB02g039540.2N, BniB05g038890.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G2170 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG09.1265, evm.TU.LG09.1331 |
| Plantaginaceae | Plantago ovata | 5 | Pov_00015764, Pov_00026610, Pov_00026612, Pov_00030100 ... |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G09557, Lb2G14720, Lb6G30440 |
| Poaceae | Oryza coarctata | 1 | Oco15G007290 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g13500.1 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG03.1866, evm.TU.LG18.231, evm.TU.LG19.863 ... |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.60437.2, evm.TU.60438.2 ... |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-24553, nbisL1-mrna-26655, nbisL1-mrna-30184 ... |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-19652, nbisL1-mrna-19677 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-16180, nbisL1-mrna-16181, nbisL1-mrna-16182 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000015l.474, evm.TU.utg000015l.496 ... |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015544 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-13853, nbisL1-mrna-4414 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-14995, nbisL1-mrna-20948, nbisL1-mrna-2534 |
| Salicaceae | Populus euphratica | 5 | populus_peu02125, populus_peu02159, populus_peu35641 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132600619, gene-LOC132628577, gene-LOC132643502 |
| Solanaceae | Solanum chilense | 2 | SOLCI000856900, SOLCI001367300 |
| Solanaceae | Solanum pennellii | 4 | gene-LOC107001405, gene-LOC107002913, gene-LOC107004184 ... |
| Tamaricaceae | Reaumuria soongarica | 2 | MSTRG.4135_chr03_-, STRG.4913_chr03_+ |
| Tamaricaceae | Tamarix chinensis | 2 | TC11G0055, TC11G0092 |