Basic Information
Locus ID:
nbisL1-mrna-20932
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A- site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr09 | 4503401 | 4509628 | + | nbisL1-mrna-20932 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 86,706.77 Da | 37.59 | 85.72 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01886 | EF-G | 68 | 340 | 2.10455E-179 | - |
| CDD | cd16262 | EFG_III | 460 | 535 | 4.51959E-40 | IPR009022 |
| CDD | cd01434 | EFG_mtEFG1_IV | 538 | 655 | 2.50981E-62 | IPR005517 |
| CDD | cd04091 | mtEFG1_II_like | 367 | 446 | 1.59145E-47 | - |
| Pfam | PF03144 | Elongation factor Tu domain 2 | 380 | 446 | 1.1E-14 | IPR004161 |
| Pfam | PF03764 | Elongation factor G, domain IV | 534 | 654 | 2.3E-38 | IPR005517 |
| Pfam | PF00679 | Elongation factor G C-terminus | 658 | 726 | 4.0E-18 | IPR000640 |
| Pfam | PF00009 | Elongation factor Tu GTP binding domain | 65 | 338 | 6.1E-62 | IPR000795 |
| Pfam | PF14492 | Elongation Factor G, domain III | 459 | 533 | 3.0E-31 | IPR041095 |
| SUPERFAMILY | SSF50447 | Translation proteins | 305 | 457 | 3.09E-28 | IPR009000 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 63 | 338 | 1.89E-98 | IPR027417 |
| SUPERFAMILY | SSF54211 | Ribosomal protein S5 domain 2-like | 534 | 656 | 2.4E-36 | IPR020568 |
| SUPERFAMILY | SSF54980 | EF-G C-terminal domain-like | 658 | 721 | 2.4E-16 | IPR035647 |
| SUPERFAMILY | SSF54980 | EF-G C-terminal domain-like | 457 | 534 | 5.4E-22 | IPR035647 |
| Gene3D | G3DSA:3.30.70.870 | Elongation Factor G (Translational Gtpase), domain 3 | 466 | 539 | 4.5E-29 | - |
| Gene3D | G3DSA:3.30.70.240 | - | 661 | 731 | 1.6E-68 | - |
| Gene3D | G3DSA:3.30.230.10 | - | 540 | 660 | 1.6E-68 | IPR014721 |
| Gene3D | G3DSA:3.40.50.300 | - | 52 | 343 | 7.4E-114 | IPR027417 |
| Gene3D | G3DSA:2.40.30.10 | Translation factors | 348 | 465 | 2.6E-33 | - |
| SMART | SM00838 | EFG_C_a | 657 | 770 | 3.5E-20 | IPR000640 |
| SMART | SM00889 | EFG_IV_2 | 535 | 655 | 1.2E-54 | IPR005517 |
| TIGRFAM | TIGR00484 | EF-G: translation elongation factor G | 62 | 730 | 5.0E-275 | IPR004540 |
| TIGRFAM | TIGR00231 | small_GTP: small GTP-binding protein domain | 66 | 238 | 2.9E-26 | IPR005225 |
| ProSiteProfiles | PS51722 | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 64 | 341 | 71.721535 | IPR000795 |
| ProSitePatterns | PS00301 | Translational (tr)-type guanine nucleotide-binding (G) domain signature. | 110 | 125 | - | IPR031157 |
| PRINTS | PR00315 | GTP-binding elongation factor signature | 189 | 198 | 1.0E-15 | IPR000795 |
| PRINTS | PR00315 | GTP-binding elongation factor signature | 117 | 125 | 1.0E-15 | IPR000795 |
| PRINTS | PR00315 | GTP-binding elongation factor signature | 137 | 147 | 1.0E-15 | IPR000795 |
| PRINTS | PR00315 | GTP-binding elongation factor signature | 153 | 164 | 1.0E-15 | IPR000795 |
| PRINTS | PR00315 | GTP-binding elongation factor signature | 68 | 81 | 1.0E-15 | IPR000795 |
| Hamap | MF_00054_B | Elongation factor G [fusA]. | 62 | 774 | 105.429886 | IPR004540 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45030.1 | Translation elongation factor EFG/EF2 protein. | 0 |
| RefSeq | XP_012088262.1 | elongation factor G-1, mitochondrial [Jatropha curcas] | 0 |
| F4IW10 | Elongation factor G-2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MEFG2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2LUA0 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg1787 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11196 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah001767 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g189370 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg40837, Sbi_jg50799 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2349 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00023352 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl43481, Sgl48280 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011059, gene:ENSEOMG00000032789 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0012140, CQ.Regalona.r1.8BG0013370 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30002230 |
| Apiaceae | Apium graveolens | 1 | Ag1G00114 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G011170 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103702480 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.1095.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G31122 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G45332.1, AT2G45030.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10001325m.g.v1.0, Thhalv10028174m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g27090.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g003460.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1101 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1122 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g13530 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0369s00012.v1.0, Dusal.0369s00013.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g18790 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.119 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014964 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G19610, Lb3G19611 |
| Poaceae | Echinochloa crus-galli | 4 | AH09.472, BH09.516, CH05.3094, CH09.566 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0524730, gene-QOZ80_6BG0478400 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0712610.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_033777 |
| Poaceae | Oryza coarctata | 1 | Oco05G017020 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g36780.1, LOC_Os03g37110.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G144800, gene-BS78_04G134200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0400058, Pt_Chr0400064 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr14G008040, Chr21G008200 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G591700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG046900, gene_TRIDC7BG040830 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G336600.4, TraesCS7B02G248200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb064310_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-31756, nbis-gene-55081 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g31999 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.1149, evm.TU.LG21.786 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g11250 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.1240 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-20932 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8691 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21225 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.767 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009646 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1288 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4836 |
| Salicaceae | Populus euphratica | 2 | populus_peu03370, populus_peu34219 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645763 |
| Solanaceae | Solanum chilense | 1 | SOLCI001542200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107006383 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_12681 |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G0708 |
| Zosteraceae | Zostera marina | 1 | Zosma04g08770.v3.1 |