Basic Information
Locus ID:
nbisL1-mrna-2092
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
NEDD8-activating enzyme E1 catalytic
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001711F_pilon | 3762933 | 3766054 | + | nbisL1-mrna-2092 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.04 | 46,382.32 Da | 38.88 | 104.35 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00899 | ThiF family | 34 | 287 | 6.1E-68 | IPR000594 |
| Pfam | PF08825 | E2 binding domain | 319 | 408 | 2.4E-24 | IPR014929 |
| SUPERFAMILY | SSF69572 | Activating enzymes of the ubiquitin-like proteins | 44 | 386 | 1.19E-92 | IPR035985 |
| Gene3D | G3DSA:3.10.290.20 | - | 316 | 401 | 3.6E-17 | - |
| Gene3D | G3DSA:1.10.10.520 | Ubiquitin activating enzymes (Uba3). Chain: B, domain 2 | 228 | 252 | 1.2E-6 | IPR023318 |
| Gene3D | G3DSA:1.10.10.520 | Ubiquitin activating enzymes (Uba3). Chain: B, domain 2 | 200 | 227 | 1.3E-9 | IPR023318 |
| Gene3D | G3DSA:3.40.50.720 | - | 13 | 307 | 2.8E-71 | - |
| SMART | SM01181 | E2_bind_2 | 318 | 409 | 1.9E-39 | IPR014929 |
| ProSitePatterns | PS00865 | Ubiquitin-activating enzyme active site. | 202 | 210 | - | IPR033127 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19180.1 | E1 C-terminal related 1. Encodes a subunit of a RUB-activating enzyme analogous to the E1 ubiquitin-activating enzyme. ECR1 functions as a heterodimer with AXR1 to activate RUB, a ubiquitin-related protein. | 0 |
| RefSeq | XP_002517184.1 | NEDD8-activating enzyme E1 catalytic subunit [Ricinus communis] | 0 |
| O65041 | NEDD8-activating enzyme E1 catalytic subunit OS=Arabidopsis thaliana OX=3702 GN=ECR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2K7G8 | NEDD8-activating enzyme E1 catalytic subunit OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg12531, jg27923, jg27924, jg5598 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_2660 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah020195 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg5036, Sbi_jg6808 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12995 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003834 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl00384, Sgl05464 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000013734, gene:ENSEOMG00000032048 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0013810, CQ.Regalona.r1.3BG0013940 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30237290 |
| Apiaceae | Apium graveolens | 2 | Ag1G00294, Ag8G01637 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G017250 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103712331 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.2793.V1.1, AsparagusV1_07.1809.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G33310 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G19180.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013467m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g25195.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g043520.2N, BniB08g009720.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1304 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1395 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g10360 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0322s00012.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g11780 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.1097 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00021254 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G33937 |
| Poaceae | Echinochloa crus-galli | 4 | AH02.866, AH07.3303, BH02.1266, CH02.1391 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0004090, gene-QOZ80_1BG0052510 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0256580.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_018369, gene-QYE76_052375 |
| Poaceae | Oryza coarctata | 2 | Oco01G007640, Oco02G007940 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g16540.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G116300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0603771, Pt_Chr0603854 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G026990, Chr03G001250, Chr05G004700, Chr08G003890 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G322400 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC3AG026070, gene_TRIDC3BG029760 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G187200.1, TraesCS3B02G216600.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb332890_P002, Zm00001eb346970_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-32526 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g7341 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1695, evm.TU.LG11.1053 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g20760 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.479 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6464 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6204 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.930 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012800 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6328 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2092 |
| Salicaceae | Populus euphratica | 3 | populus_peu07881, populus_peu21998, populus_peu35359 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132644977 |
| Solanaceae | Solanum chilense | 1 | SOLCI006175800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007881 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8464 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1429 |