Basic Information
Locus ID:
nbisL1-mrna-20884
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000883F_pilon | 1166038 | 1175499 | + | nbisL1-mrna-20884 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 119,410.24 Da | 43.66 | 80.52 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 397 | 723 | 2.10587E-87 | - |
| CDD | cd18793 | SF2_C_SNF | 918 | 1028 | 1.60186E-52 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 419 | 767 | 3.2E-63 | IPR000330 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 917 | 1018 | 1.2E-15 | IPR001650 |
| SUPERFAMILY | SSF57850 | RING/U-box | 770 | 813 | 1.31E-7 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 383 | 723 | 5.58E-45 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 630 | 1074 | 4.85E-52 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 608 | 735 | 5.9E-29 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 366 | 460 | 2.1E-10 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 767 | 816 | 2.8E-7 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 487 | 578 | 4.1E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 897 | 1073 | 1.7E-55 | IPR027417 |
| SMART | SM00490 | helicmild6 | 935 | 1018 | 1.2E-17 | IPR001650 |
| SMART | SM00487 | ultradead3 | 393 | 702 | 1.6E-28 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 912 | 1071 | 15.433556 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 508 | 685 | 11.848299 | IPR014001 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 780 | 789 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 282 | 315 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 293 | 312 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 573 | 610 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 573 | 596 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.3 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_021676528.1 | helicase-like transcription factor CHR28 isoform X1 [Hevea brasiliensis] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2KS41 | Uncharacterized protein LOC105649495 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology