Basic Information
Locus ID:
nbisL1-mrna-20877
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
bromo domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000883F_pilon | 1125964 | 1127361 | - | nbisL1-mrna-20877 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.08 | 38,248.46 Da | 47.69 | 67.99 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00439 | Bromodomain | 147 | 225 | 1.1E-4 | IPR001487 |
| SUPERFAMILY | SSF47370 | Bromodomain | 131 | 236 | 4.32E-12 | IPR036427 |
| Gene3D | G3DSA:1.20.920.10 | - | 142 | 252 | 2.1E-10 | IPR036427 |
| SMART | SM00297 | bromo_6 | 138 | 241 | 2.5E-4 | IPR001487 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61215.2 | - | 0 |
| RefSeq | XP_052308519.1 | uncharacterized protein LOC7490802 isoform X3 [Populus trichocarpa] | 0 |
| TrEMBL | A0A6M2EW99 | Bromo domain-containing protein OS=Populus davidiana OX=266767 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg22036 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_22290 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah017930 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg10177, Sbi_jg26393 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg22252 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00023969 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl45798, Sgl45838, Sgl50535 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011637, gene:ENSEOMG00000034232 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.8BG0004640 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30092460 |
| Apiaceae | Apium graveolens | 1 | Ag7G00688 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G009720, COCNU_14G006410 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103721472 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.2223.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G09847 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G61215.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10023448m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g03260.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g047240.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G2448 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G2703 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-3484 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.1007 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005718 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb2G10378, Lb2G10379, Lb2G15300, Lb4G26171 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0572910, gene-QOZ80_7BG0604170 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0134510.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_027228, gene-QYE76_040422 |
| Poaceae | Oryza coarctata | 2 | Oco13G010200, Oco14G010840 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g37800.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G317000 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr19G004260, Chr24G010210, Chr27G013030, Chr28G009510 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G383900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG026140, gene_TRIDC2BG030600 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G202700.1, TraesCS2B02G229800.1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb033860_P001, Zm00001eb107020_P002 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-10602, nbis-gene-55378, nbis-gene-674 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g5358, Zma_g6673 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.1667, evm.TU.LG14.895 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.60431.2, evm.TU.60432.2 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-23810, nbisL1-mrna-29528, nbisL1-mrna-29909 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-2171, nbisL1-mrna-9156 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-20877, nbisL1-mrna-21621 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000015l.119, evm.TU.utg000027l.99 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00015334, Maker00017471 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10654, nbisL1-mrna-5980 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-16921, nbisL1-mrna-23918 |
| Salicaceae | Populus euphratica | 2 | populus_peu10125, populus_peu18246 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132622176, gene-LOC132631583 |
| Solanaceae | Solanum chilense | 2 | SOLCI000342200, SOLCI005986200 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107009260, gene-LOC107032364 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16688 |
| Tamaricaceae | Tamarix chinensis | 2 | TC07G1247, TC08G0608 |