Basic Information
Locus ID:
nbisL1-mrna-20830
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Ethylene-overproduction protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001373F_pilon | 745733 | 752472 | - | nbisL1-mrna-20830 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 104,264.41 Da | 47.38 | 90.69 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13181 | Tetratricopeptide repeat | 862 | 894 | 0.055 | IPR019734 |
| Pfam | PF13181 | Tetratricopeptide repeat | 733 | 761 | 0.0014 | IPR019734 |
| SUPERFAMILY | SSF54695 | POZ domain | 204 | 299 | 1.26E-6 | IPR011333 |
| SUPERFAMILY | SSF48452 | TPR-like | 611 | 764 | 1.52E-7 | IPR011990 |
| SUPERFAMILY | SSF48452 | TPR-like | 400 | 529 | 5.25E-7 | IPR011990 |
| SUPERFAMILY | SSF48452 | TPR-like | 497 | 860 | 2.66E-16 | IPR011990 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 194 | 340 | 7.8E-10 | IPR011333 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 370 | 605 | 7.8E-10 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 817 | 913 | 5.9E-11 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 608 | 816 | 1.6E-15 | IPR011990 |
| SMART | SM00028 | tpr_5 | 404 | 437 | 220.0 | IPR019734 |
| SMART | SM00671 | sel1 | 404 | 435 | 0.57 | IPR006597 |
| SMART | SM00671 | sel1 | 732 | 763 | 58.0 | IPR006597 |
| SMART | SM00028 | tpr_5 | 828 | 861 | 47.0 | IPR019734 |
| SMART | SM00028 | tpr_5 | 732 | 765 | 1.5E-4 | IPR019734 |
| SMART | SM00028 | tpr_5 | 659 | 692 | 450.0 | IPR019734 |
| SMART | SM00028 | tpr_5 | 862 | 894 | 3.0 | IPR019734 |
| SMART | SM00028 | tpr_5 | 533 | 566 | 10.0 | IPR019734 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 861 | 894 | 8.4669 | IPR019734 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 732 | 765 | 9.7944 | IPR019734 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
| Coils | Coil | Coil | 777 | 804 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G51770.1 | tetratricopeptide repeat (TPR)-containing protein. Encodes a negative regulator of 1-aminocyclopropane-1-carboxylic acid synthase5(ACS5), which catalyze the rate-limiting step in ethylene biosynthesis. ETO1 directly interacts with ACS5 and inhibits its enzyme activity and targets it for degradation via proteasome-dependent pathway. It also interacts with CUL3 (a component of ubiquitin ligase complexes). eto1 (and eto3) mutations elevate ethylene biosynthesis by affecting the posttranscriptional regulation of ACS | 0 |
| RefSeq | XP_052303231.1 | ethylene-overproduction protein 1-like [Populus trichocarpa] | 0 |
| O65020 | Ethylene-overproduction protein 1 OS=Arabidopsis thaliana OX=3702 GN=ETO1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8T2ZQR5 | BTB domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_001395 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg32480 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15223 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah003273 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g103120 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4808, Sbi_jg7275 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12734 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001451 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51665, Sgl56974 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004208, gene:ENSEOMG00000023479 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0010520, CQ.Regalona.r1.5BG0011030 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30061070, pistato.v30267560 |
| Apiaceae | Apium graveolens | 1 | Ag2G01831 |
| Arecaceae | Cocos nucifera | 1 | COCNU_16G006310 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103706721 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G25809, Ftri12G22421 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G51770.2, AT5G58550.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10010100m.g.v1.0, Thhalv10012604m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp4g20600.v2.2, Sp5g10500.v2.2, Sp6g20240.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB02g037950.2N, BniB02g074490.2N, BniB06g006360.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq08G0982, Ceq08G1837 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl08G1000, Cgl08G1895 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g16870 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g32230, gene.Thate06g02770 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5512 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.969, evm.TU.LG09.1053 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00002688, Pov_00016341 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G10681, Lb7G33968, Lb7G33977 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.3973, BH01.4368, CH01.4607 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0244460, gene-QOZ80_3BG0283570 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0384400.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_008092, gene-QYE76_068726 |
| Poaceae | Oryza coarctata | 2 | Oco05G010770, Oco06G011000 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g28830.1, LOC_Os03g18360.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G387800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0102434, Pt_Chr0102465 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr01G032160, Chr12G007460 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G343700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG015380, gene_TRIDC4BG033570 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G111500.1, TraesCS4B02G192300.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb013600_P001, Zm00001eb396900_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-3604 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g3828 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG03.443, evm.TU.LG04.2820, evm.TU.LG16.836 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g37450 |
| Rhizophoraceae | Bruguiera sexangula | 4 | evm.TU.Scaffold_12_RagTag.99, evm.TU.Scaffold_13_RagTag.956 ... |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-24700, nbisL1-mrna-30059, nbisL1-mrna-4604 ... |
| Rhizophoraceae | Ceriops tagal | 4 | nbisL1-mrna-12897, nbisL1-mrna-1364, nbisL1-mrna-15494 ... |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-16323, nbisL1-mrna-19406, nbisL1-mrna-3675 ... |
| Rhizophoraceae | Kandelia candel | 4 | evm.TU.utg000009l.998, evm.TU.utg000015l.568 ... |
| Rhizophoraceae | Kandelia obovata | 4 | Maker00006267, Maker00015658, Maker00017259, Maker00018123 |
| Rhizophoraceae | Rhizophora apiculata | 4 | nbisL1-mrna-2668, nbisL1-mrna-4473, nbisL1-mrna-4936 ... |
| Rhizophoraceae | Rhizophora mangle | 4 | nbisL1-mrna-11634, nbisL1-mrna-13784, nbisL1-mrna-16670 ... |
| Salicaceae | Populus euphratica | 3 | populus_peu01731, populus_peu11460, populus_peu36082 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132630903, gene-LOC132630950 |
| Solanaceae | Solanum chilense | 2 | SOLCI000749400, SOLCI001511200 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002738, gene-LOC107031354 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_12187, gene_12260 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G2778, TC06G0264 |
| Zosteraceae | Zostera marina | 1 | Zosma01g20720.v3.1 |