Basic Information
Locus ID:
nbisL1-mrna-20810
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
rho GTPase-activating protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001373F_pilon | 627969 | 637770 | - | nbisL1-mrna-20810 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.65 | 73,330.17 Da | 60.74 | 76.92 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00159 | RhoGAP | 47 | 186 | 1.30636E-32 | - |
| Pfam | PF00620 | RhoGAP domain | 47 | 191 | 2.1E-31 | IPR000198 |
| Pfam | PF14389 | Leucine-zipper of ternary complex factor MIP1 | 406 | 486 | 9.8E-22 | IPR025757 |
| SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 47 | 236 | 2.94E-34 | IPR008936 |
| Gene3D | G3DSA:1.10.555.10 | Rho GTPase activation protein | 16 | 236 | 5.4E-42 | IPR008936 |
| SMART | SM00324 | RhoGAP_3 | 44 | 231 | 8.3E-27 | IPR000198 |
| ProSiteProfiles | PS50238 | Rho GTPase-activating proteins domain profile. | 38 | 234 | 29.813625 | IPR000198 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 248 | 293 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 329 | 359 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 250 | 273 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 329 | 366 | - | - |
| Coils | Coil | Coil | 74 | 94 | - | - |
| Coils | Coil | Coil | 615 | 642 | - | - |
| Coils | Coil | Coil | 396 | 430 | - | - |
| Coils | Coil | Coil | 371 | 391 | - | - |
| Coils | Coil | Coil | 455 | 489 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19390.1 | Rho GTPase activation protein (RhoGAP) with PH domain. Encodes a protein with similarity to REN1, a Rho GTPase activating protein. | 0 |
| RefSeq | XP_002314002.4 | - | 0 |
| Q8RWQ4 | Rho GTPase-activating protein 7 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A067LGF7 | Rho GTPase-activating protein 7-like OS=Jatropha curcas OX=180498 GN=JCGZ_22776 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology