Basic Information
Locus ID:
nbisL1-mrna-20810
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000883F_pilon | 575637 | 576143 | - | nbisL1-mrna-20810 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.26 | 19,518.59 Da | 34.58 | 98.57 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 20 | 86 | 5.1219E-13 | - |
| Pfam | PF00240 | Ubiquitin family | 25 | 88 | 1.8E-10 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 9 | 89 | 9.21E-14 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 10 | 91 | 9.0E-10 | - |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 15 | 89 | 11.115551 | IPR000626 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.102 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-29680 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20810 |