Basic Information
Locus ID:
nbisL1-mrna-20743
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr09 | 3011986 | 3019798 | - | nbisL1-mrna-20743 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.98 | 52,919.86 Da | 46.25 | 87.70 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 179 | 420 | 4.08253E-88 | - |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 52 | 139 | 6.9E-14 | IPR020683 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 171 | 420 | 9.2E-55 | IPR001245 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 51 | 142 | 7.31E-26 | IPR036770 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 170 | 420 | 8.18E-65 | IPR011009 |
| Gene3D | G3DSA:1.25.40.20 | - | 14 | 153 | 2.3E-28 | IPR036770 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 241 | 439 | 1.6E-49 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 157 | 240 | 5.6E-19 | - |
| SMART | SM00248 | ANK_2a | 80 | 109 | 5.1E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 113 | 142 | 0.98 | IPR002110 |
| SMART | SM00248 | ANK_2a | 47 | 76 | 170.0 | IPR002110 |
| PIRSF | PIRSF000654 | ILK | 2 | 442 | 2.0E-186 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 80 | 112 | 13.57534 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 80 | 112 | 14.95977 | IPR002110 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 130 | 423 | 38.675583 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 45 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 21 | 45 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58760.1 | Integrin-linked protein kinase family. | 0 |
| RefSeq | XP_021603485.1 | - | 0 |
| Q93Z30 | Serine/threonine-protein kinase 12 OS=Arabidopsis thaliana OX=3702 GN=BHP PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2L8L4 | Serine/threonine-protein kinase HT1 isoform X1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg20681, jg21303, jg24979 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_22390 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah016807, Ah038020 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_8g188320, BVRB_9g205990 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg40319, Sbi_jg50313, Sbi_jg50937, Sbi_jg60367 |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg1903, Seu_jg22440, Seu_jg22919 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00011479, GOSA_00015793 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl45611, Sgl50392, Sgl78356, Sgl78369, Sgl80870, Sgl80875 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000009827, gene:ENSEOMG00000018520 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.8AG0008000, CQ.Regalona.r1.8BG0008530 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30071200 |
| Apiaceae | Apium graveolens | 2 | Ag7G00848, Ag8G00835 |
| Arecaceae | Cocos nucifera | 3 | COCNU_03G014100, COCNU_06G003890, COCNU_14G002530 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103708951, gene-LOC103717204, gene-LOC120111735 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.991.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G18528, Ftri5G24735 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G58760.1, AT4G18950.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10005950m.g.v1.0, Thhalv10025157m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp5g04080.v2.2, Sp7g17660.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB05g017430.2N, BniB06g063270.2N, BniB07g023840.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G2919, Ceq04G0476 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G3044, Cgl04G0573 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno06g04190, gene.Cymno16g05880 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0181s00022.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g05670 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-3414, nbisL1-mrna-4728 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.745 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00004842, Pov_00008687 |
| Plumbaginaceae | Limonium bicolor | 7 | Lb1G00263, Lb1G00381, Lb1G03698, Lb3G19740, Lb3G21243 ... |
| Poaceae | Echinochloa crus-galli | 3 | AH02.3177, BH02.3712, CH02.3252 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0033170, gene-QOZ80_1BG0083250 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0288750.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_043004, gene-QYE76_048211, gene-QYE76_055273 |
| Poaceae | Oryza coarctata | 3 | Oco01G019210, Oco02G020630, Oco22G005700 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g54480.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G275400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0602206 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G009780, Chr03G016080, Chr05G023700, Chr08G016130 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G450700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG040580, gene_TRIDC3BG045720 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G272900.1, TraesCS3B02G306500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb153180_P001 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g11132 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG16.1263, evm.TU.LG18.212, evm.TU.LG18.965 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g17580, gene.Posoc09g00430 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_13_RagTag.427, evm.TU.Scaffold_9_RagTag.1572 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-20743, nbisL1-mrna-20754, nbisL1-mrna-30703 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-1535, nbisL1-mrna-9957 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-22060 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.992, evm.TU.utg000015l.214 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009530, Maker00015288 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-13976, nbisL1-mrna-4125 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-21532, nbisL1-mrna-4522 |
| Salicaceae | Populus euphratica | 1 | populus_peu09874 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132618009, gene-LOC132625018 |
| Solanaceae | Solanum chilense | 1 | SOLCI003234500 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107011645, gene-LOC107012425, gene-LOC107026576 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_4682, gene_5393 |
| Tamaricaceae | Tamarix chinensis | 3 | TC01G0435, TC02G2816, TC08G0364 |
| Zosteraceae | Zostera marina | 2 | Zosma01g05540.v3.1, Zosma04g04670.v3.1 |