Basic Information
Locus ID:
nbisL1-mrna-20718
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Organic cation carnitine transporter
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001373F_pilon | 66279 | 70380 | + | nbisL1-mrna-20718 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.55 | 58,111.64 Da | 36.36 | 107.73 | 0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00083 | Sugar (and other) transporter | 92 | 259 | 1.1E-31 | IPR005828 |
| Pfam | PF07690 | Major Facilitator Superfamily | 376 | 521 | 1.5E-11 | IPR011701 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 41 | 516 | 9.02E-71 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 51 | 519 | 3.4E-85 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 58 | 511 | 39.281239 | IPR020846 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13050.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_020539794.1 | organic cation/carnitine transporter 7 isoform X2 [Jatropha curcas] | 0 |
| Q940M4 | Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana OX=3702 GN=OCT7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A067JM06 | MFS domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_22561 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology