Basic Information
Locus ID:
nbisL1-mrna-2065
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
F-box LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001711F_pilon | 3613024 | 3618571 | - | nbisL1-mrna-2065 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.35 | 67,285.48 Da | 34.40 | 106.29 | 0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 534 | 556 | 0.1 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 355 | 375 | 0.25 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 172 | 194 | 0.0016 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 483 | 505 | 0.0042 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 457 | 479 | 0.047 | IPR001611 |
| Pfam | PF18511 | F-box | 10 | 48 | 1.4E-8 | IPR041567 |
| Pfam | PF13516 | Leucine Rich repeat | 198 | 221 | 0.4 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 132 | 346 | 8.63E-29 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 10 | 47 | 1.7E-7 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 275 | 590 | 6.95E-48 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 368 | 618 | 4.2E-52 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 45 | 367 | 2.4E-52 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 6 | 44 | 3.4E-12 | - |
| SMART | SM00367 | LRR_CC_2 | 147 | 172 | 0.54 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 379 | 404 | 0.77 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 483 | 507 | 0.038 | IPR006553 |
| SMART | SM00256 | fbox_2 | 11 | 52 | 0.0024 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 405 | 430 | 0.0092 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 173 | 197 | 0.27 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 431 | 456 | 3.5E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 353 | 378 | 0.67 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 534 | 559 | 1.5E-6 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 301 | 326 | 0.37 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 457 | 482 | 3.3E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 225 | 250 | 4.6 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 560 | 585 | 14.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 198 | 223 | 3.4E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 327 | 352 | 2.1E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 251 | 275 | 160.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 276 | 300 | 11.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 508 | 533 | 30.0 | IPR006553 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 5 | 52 | 8.517177 | IPR001810 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G15475.1 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_006489225.1 | F-box/LRR-repeat protein 4 [Citrus sinensis] | 0 |
| Q9C5D2 | F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana OX=3702 GN=FBL4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2KM93 | F-box domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg12493 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4170 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30237970, pistato.v30238000 |
| Apiaceae | Apium graveolens | 1 | Ag1G01919 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G007540 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103723004 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.1400.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G22647 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G15475.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024700m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g13700.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g073970.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1354 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g00110 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g00400 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.1413 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00026246, Pov_00026249, Pov_00034018 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G00114 |
| Poaceae | Echinochloa crus-galli | 5 | AH02.2463, BH04.2128, CH02.1614, CH03.2032, CH04.2458 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0690790, gene-QOZ80_9BG0717100 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0365590.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_065994 |
| Poaceae | Oryza coarctata | 2 | Oco21G008990, Oco22G010240 |
| Poaceae | Oryza sativa | 3 | LOC_Os08g30980.1, LOC_Os10g05800.2, LOC_Os11g42160.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G225300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0103366 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr07G014250, Chr31G008270 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G244800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG020800, gene_TRIDC4BG024690 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G142500.3, TraesCS4D02G148000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb115300_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-37587, nbis-gene-37589, nbis-gene-58391 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g18228, Zma_g18230 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.2060, evm.TU.LG14.358 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g34700 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.507 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1455 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17342 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6229 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.912 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012570 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6308 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2065 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132642061 |
| Solanaceae | Solanum chilense | 1 | SOLCI001496100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107021070 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9380 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1503 |
| Zosteraceae | Zostera marina | 1 | Zosma04g26890.v3.1 |