Basic Information
Locus ID:
nbisL1-mrna-20649
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr09 | 2344921 | 2346914 | - | nbisL1-mrna-20649 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.57 | 66,609.87 Da | 51.96 | 77.29 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 4 | 41 | 1.6E-6 | IPR001810 |
| Pfam | PF03478 | Protein of unknown function (DUF295) | 332 | 369 | 1.3E-7 | IPR005174 |
| SUPERFAMILY | SSF81383 | F-box domain | 2 | 39 | 5.23E-8 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 3 | 44 | 2.1E-9 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 495 | 515 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 547 | 580 | - | - |
| Coils | Coil | Coil | 520 | 540 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35733.1 | F-box family protein with a domain of unknown function (DUF295). | 0 |
| RefSeq | XP_017972616.1 | PREDICTED: F-box protein At2g26160 [Theobroma cacao] | 0 |
| B3H6C3 | F-box protein At4g35733 OS=Arabidopsis thaliana OX=3702 GN=At4g35733 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1R3JES5 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.1491 |
| Rhizophoraceae | Carallia pectinifolia | 6 | nbisL1-mrna-20646, nbisL1-mrna-20648, nbisL1-mrna-20649 ... |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21479 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.941 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009936 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-12041, nbisL1-mrna-4590, nbisL1-mrna-4591 |