Basic Information
Locus ID:
nbisL1-mrna-20646
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr09 | 2325981 | 2327747 | - | nbisL1-mrna-20646 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.94 | 49,149.13 Da | 47.39 | 70.57 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 341 | 373 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 374 | 388 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 309 | 340 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 406 | 425 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 309 | 438 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_017972616.1 | PREDICTED: F-box protein At2g26160 [Theobroma cacao] | 0 |
| TrEMBL | A0A1R3JES5 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.1491 |
| Rhizophoraceae | Carallia pectinifolia | 6 | nbisL1-mrna-20646, nbisL1-mrna-20648, nbisL1-mrna-20649 ... |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21479 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.941 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009936 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-12041, nbisL1-mrna-4590, nbisL1-mrna-4591 |