Basic Information
Locus ID:
nbisL1-mrna-20643
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Agamous-like MADS-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001341F_pilon | 1008267 | 1012577 | + | nbisL1-mrna-20643 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.96 | 23,961.28 Da | 59.06 | 84.90 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 3 | 70 | 9.26064E-39 | IPR033896 |
| Pfam | PF01486 | K-box region | 82 | 166 | 2.3E-21 | IPR002487 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 1.8E-24 | IPR002100 |
| SUPERFAMILY | SSF55455 | SRF-like | 3 | 74 | 8.89E-31 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 14 | 95 | 2.8E-27 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 4.7E-38 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 83 | 173 | 13.830461 | IPR002487 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 30.515417 | IPR002100 |
| ProSitePatterns | PS00350 | MADS-box domain signature. | 3 | 57 | - | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 6.5E-29 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 6.5E-29 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 6.5E-29 | IPR002100 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 164 | 192 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 170 | 192 | - | - |
| Coils | Coil | Coil | 146 | 166 | - | - |
| Coils | Coil | Coil | 117 | 137 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G62165.1 | AGAMOUS-like 42. Encodes a MADS box transcription factor. Expressed in quiescent center. | 0 |
| RefSeq | XP_021649083.1 | - | 0 |
| Q9FIS1 | MADS-box protein AGL42 OS=Arabidopsis thaliana OX=3702 GN=AGL42 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2LF21 | Mads box protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology