Basic Information
Locus ID:
nbisL1-mrna-20635
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001341F_pilon | 974491 | 978002 | + | nbisL1-mrna-20635 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.23 | 51,153.09 Da | 29.52 | 85.14 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 304 | 338 | 0.0088 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 142 | 178 | 3.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 282 | 298 | 0.22 | IPR001680 |
| Pfam | PF18044 | CCCH-type zinc finger | 112 | 132 | 4.2E-8 | IPR041367 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 142 | 442 | 2.2E-42 | IPR036322 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 109 | 133 | 3.92E-7 | IPR036855 |
| Gene3D | G3DSA:2.130.10.10 | - | 201 | 450 | 4.2E-26 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 135 | 200 | 2.5E-9 | IPR015943 |
| Gene3D | G3DSA:2.30.30.1190 | - | 83 | 134 | 1.1E-5 | - |
| SMART | SM00320 | WD40_4 | 302 | 339 | 8.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 218 | 255 | 17.0 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 25 | 49 | 0.75 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 110 | 134 | 9.3E-6 | IPR000571 |
| SMART | SM00320 | WD40_4 | 139 | 178 | 5.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 262 | 299 | 0.02 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 108 | 135 | 15.168655 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 269 | 308 | 10.642123 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 24 | 50 | 9.985872 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 146 | 187 | 14.084198 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 146 | 178 | 11.154684 | - |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 165 | 179 | 5.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 286 | 300 | 5.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 326 | 340 | 5.7E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 80 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_021615892.1 | zinc finger CCCH domain-containing protein 48 isoform X2 [Manihot esculenta] | 0 |
| Q9FNZ2 | Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana OX=3702 GN=ZFWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2M7Y4 | Uncharacterized protein MANES_06G142500 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology