Basic Information
Locus ID:
nbisL1-mrna-20614
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001341F_pilon | 859829 | 863559 | - | nbisL1-mrna-20614 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 55,232.61 Da | 43.64 | 85.34 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00023 | Ankyrin repeat | 112 | 130 | 0.016 | IPR002110 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 176 | 246 | 2.3E-12 | IPR020683 |
| Pfam | PF13637 | Ankyrin repeats (many copies) | 46 | 97 | 4.1E-12 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 14 | 274 | 2.26E-46 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 310 | 375 | 9.32E-8 | - |
| Gene3D | G3DSA:1.25.40.20 | - | 4 | 148 | 1.7E-30 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 304 | 385 | 6.8E-7 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 149 | 281 | 7.2E-21 | IPR036770 |
| SMART | SM00248 | ANK_2a | 220 | 252 | 1.1E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 77 | 106 | 0.55 | IPR002110 |
| SMART | SM00248 | ANK_2a | 44 | 73 | 7.3E-6 | IPR002110 |
| SMART | SM00248 | ANK_2a | 111 | 142 | 3.8 | IPR002110 |
| SMART | SM00248 | ANK_2a | 177 | 206 | 7.1E-5 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 111 | 132 | 8.73634 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 111 | 132 | 8.720098 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 177 | 206 | 10.577295 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 44 | 76 | 14.79951 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 220 | 246 | 10.68342 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 177 | 209 | 11.24708 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 220 | 246 | 10.71288 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 44 | 75 | 13.681465 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 319 | 369 | 9.804232 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 334 | 343 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 461 | 483 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 460 | 483 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_034924274.1 | E3 ubiquitin-protein ligase XBAT33-like [Populus alba] | 0 |
| Q4FE45 | E3 ubiquitin-protein ligase XBAT33 OS=Arabidopsis thaliana OX=3702 GN=XBAT33 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2LCV3 | Uncharacterized protein MANES_14G027900 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology