Basic Information
Locus ID:
nbisL1-mrna-20612
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Leucine-rich repeat receptor protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001341F_pilon | 852151 | 855981 | - | nbisL1-mrna-20612 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.22 | 111,840.25 Da | 34.68 | 111.54 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 267 | 286 | 1.8 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 657 | 671 | 1.1 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 706 | 765 | 6.9E-9 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 7 | 43 | 2.3E-11 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 192 | 212 | 1.2 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 360 | 416 | 2.6E-6 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 599 | 890 | 5.33E-62 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 359 | 597 | 6.35E-55 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 22 | 338 | 2.07E-54 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 600 | 894 | 5.0E-82 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 953 | 1034 | 6.2E-8 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 8 | 115 | 5.0E-27 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 190 | 336 | 1.2E-42 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 116 | 189 | 5.1E-20 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 337 | 599 | 3.6E-78 | IPR032675 |
| SMART | SM00365 | LRR_sd22_2 | 93 | 119 | 16.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 728 | 743 | 85.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 262 | 283 | 490.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 752 | 771 | 190.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 656 | 688 | 250.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 548 | 574 | 600.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 69 | 92 | 560.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 826 | 852 | 52.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 524 | 545 | 140.0 | - |
| SMART | SM00369 | LRR_typ_2 | 165 | 189 | 31.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 381 | 405 | 360.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 93 | 117 | 67.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 704 | 727 | 190.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 262 | 286 | 75.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 69 | 92 | 100.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 850 | 875 | 40.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 656 | 680 | 14.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 310 | 334 | 290.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 572 | 595 | 300.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 802 | 826 | 55.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 524 | 548 | 14.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 728 | 752 | 3.7 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 141 | 164 | 350.0 | IPR003591 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 659 | 672 | 9.5E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 728 | 741 | 9.5E-5 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07280.1 | Leucine-rich repeat transmembrane protein kinase. Encodes EMS1 (EXCESS MICROSPOROCYTES1), a putative leucine-rich repeat receptor protein kinase that controls somatic and reproductive cell fates in Arabidopsis anther. | 0 |
| RefSeq | XP_024438409.1 | leucine-rich repeat receptor protein kinase EMS1 [Populus trichocarpa] | 0 |
| Q9LYN8 | Leucine-rich repeat receptor protein kinase EMS1 OS=Arabidopsis thaliana OX=3702 GN=EMS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A835JDT7 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg12909, jg14016, jg2319, jg889 |
| Anacardiaceae | Pistacia vera | 8 | pistato.v30034580, pistato.v30167950, pistato.v30168050 ... |
| Apiaceae | Apium graveolens | 1 | Ag2G01986 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G03190 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G07280.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012465m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g35610.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g053610.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2102 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2175 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2700 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00010232 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC1BG058770 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12656, nbisL1-mrna-29200 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10442, nbisL1-mrna-7229 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-12927, nbisL1-mrna-12928, nbisL1-mrna-2139 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000008l.31, add.evm.TU.utg000010l.151 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17149, nbisL1-mrna-17646 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20612, nbisL1-mrna-6260 |
| Salicaceae | Populus euphratica | 2 | populus_peu29255, populus_peu30617 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132631870 |
| Solanaceae | Solanum chilense | 1 | SOLCI001805500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014643 |