Basic Information
Locus ID:
nbisL1-mrna-20537
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Short Name:
UBP16
Description:
ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001441F_pilon | 445590 | 454876 | + | nbisL1-mrna-20537 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.20 | 113,250.30 Da | 52.48 | 68.29 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 524 | 794 | 1.3E-30 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 547 | 796 | 1.08E-66 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 501 | 798 | 1.2E-71 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 464 | 797 | 39.502441 | IPR028889 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 817 | 846 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 138 | 156 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 176 | 205 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 505 | 524 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 454 | 495 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 177 | 205 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 806 | 846 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 387 | 402 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 372 | 402 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 994 | 1025 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 874 | 899 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 468 | 492 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 138 | 163 | - | - |
| Coils | Coil | Coil | 38 | 58 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24560.1 | ubiquitin-specific protease 16. Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation. | 0 |
| RefSeq | XP_043808900.1 | ubiquitin carboxyl-terminal hydrolase 17 [Manihot esculenta] | 0 |
| Q9SB51 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana OX=3702 GN=UBP16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2L7B7 | Ubiquitin carboxyl-terminal hydrolase 16-like OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology