Basic Information
Locus ID:
nbisL1-mrna-20533
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
LysM domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 7574021 | 7575031 | - | nbisL1-mrna-20533 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.83 | 36,863.86 Da | 69.34 | 92.56 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 205 | 242 | 1.41182E-4 | IPR018392 |
| Pfam | PF01476 | LysM domain | 206 | 249 | 3.0E-4 | IPR018392 |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 204 | 259 | 7.6E-7 | IPR036779 |
| SMART | SM00257 | LysM_2 | 205 | 249 | 2.9E-4 | IPR018392 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 204 | 248 | 9.552626 | IPR018392 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 257 | 276 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 314 | 336 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33580.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_034931353.1 | LOW QUALITY PROTEIN: protein LYK5 [Populus alba] | 0 |
| O22808 | Protein LYK5 OS=Arabidopsis thaliana OX=3702 GN=LYK5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X8CUX7 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_020265 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology